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GEO accession:
Sample GSM62746
Query DataSets for GSM62746
Status
Public on May 22, 2007
Title
C03 _21 CTRL kidney 12 months No. 17
Sample type
RNA
Source name
Kidney
Organism
Rattus norvegicus
Characteristics
CTRL kidney 12 months
Treatment protocol
Extracted molecule
total RNA
Extraction protocol
Clonetech
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
C03 _21 CTRL kidney 12 months
Data processing
Affymetrix Microarray Suite version 5.0 followed by GEA
Submission date
Jun 29, 2005
Last update date
May 22, 2007
Contact name
James Holzwarth
E-mail(s)
james.holzwarth@rdls.nestle.com
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL85
Series (2)
GSE2852
Ochratoxin A study on rat liver and kidney gene expression
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
2.30615
A
0.904333
AFFX-MurIL10_at
5.8028
A
0.631562
AFFX-MurIL4_at
0.70711
A
0.876428
AFFX-MurFAS_at
1.70434
A
0.783476
AFFX-BioB-5_at
55.2646
A
0.131361
AFFX-BioB-M_at
161.085
P
0.000581214
AFFX-BioB-3_at
91.9206
P
0.00401721
AFFX-BioC-5_at
233.251
P
0.000195116
AFFX-BioC-3_at
163.298
P
0.000581214
AFFX-BioDn-5_at
281.552
P
0.000662269
AFFX-BioDn-3_at
1789.61
P
0.000169227
AFFX-CreX-5_at
3328.43
P
4.43E-05
AFFX-CreX-3_at
4852.41
P
4.43E-05
AFFX-BioB-5_st
49.6599
A
0.102165
AFFX-BioB-M_st
51.8405
A
0.139482
AFFX-BioB-3_st
6.82922
A
0.876428
AFFX-BioC-5_st
5.1776
A
0.883887
AFFX-BioC-3_st
2.72589
A
0.814869
AFFX-BioDn-5_st
31.9869
A
0.250796
AFFX-BioDn-3_st
50.7443
A
0.083592
Total number of rows:
8799
Table truncated, full table size
284 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62746.CEL.gz
1.9 Mb
(ftp)
(http)
CEL
GSM62746.EXP.gz
311 b
(ftp)
(http)
EXP
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