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GEO accession:
Sample GSM62773
Query DataSets for GSM62773
Status
Public on May 22, 2007
Title
C03 _ 20 CTRL kidney 12 months No. 44
Sample type
RNA
Source name
Kidney
Organism
Rattus norvegicus
Characteristics
CTRL kidney 12 months
Treatment protocol
Extracted molecule
total RNA
Extraction protocol
Clonetech
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
C03 _ 20 CTRL kidney 12 months
Data processing
Affymetrix Microarray Suite version 5.0 followed by GEA
Submission date
Jun 29, 2005
Last update date
May 22, 2007
Contact name
James Holzwarth
E-mail(s)
james.holzwarth@rdls.nestle.com
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL85
Series (2)
GSE2852
Ochratoxin A study on rat liver and kidney gene expression
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
1.88482
A
0.852061
AFFX-MurIL10_at
3.47027
A
0.58862
AFFX-MurIL4_at
1.3448
A
0.843268
AFFX-MurFAS_at
3.72113
A
0.559354
AFFX-BioB-5_at
81.9742
A
0.131361
AFFX-BioB-M_at
85.4435
P
0.00499819
AFFX-BioB-3_at
44.449
P
0.0138105
AFFX-BioC-5_at
178.996
P
0.000445901
AFFX-BioC-3_at
76.3741
P
0.00762003
AFFX-BioDn-5_at
188.272
P
0.0020226
AFFX-BioDn-3_at
1093.73
P
0.000581214
AFFX-CreX-5_at
1796.71
P
4.43E-05
AFFX-CreX-3_at
2759.74
P
4.43E-05
AFFX-BioB-5_st
39.0676
A
0.165861
AFFX-BioB-M_st
30.412
A
0.313723
AFFX-BioB-3_st
3.97648
A
0.937071
AFFX-BioC-5_st
3.47455
A
0.904333
AFFX-BioC-3_st
1.00988
A
0.9273
AFFX-BioDn-5_st
5.61399
A
0.60308
AFFX-BioDn-3_st
38.3574
A
0.250796
Total number of rows:
8799
Table truncated, full table size
284 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62773.CEL.gz
1.9 Mb
(ftp)
(http)
CEL
GSM62773.EXP.gz
477 b
(ftp)
(http)
EXP
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