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GEO accession:
Sample GSM62790
Query DataSets for GSM62790
Status
Public on May 22, 2007
Title
C03_21 CTRL liver 12 months No. 61
Sample type
RNA
Source name
Liver
Organism
Rattus norvegicus
Characteristics
CTRL liver 12 months
Treatment protocol
Extracted molecule
total RNA
Extraction protocol
Clonetech
Label
biotin
Label protocol
5 ug of cRNA was used to make biotinylated RNA
Hybridization protocol
standard Affymetrix procedure
Scan protocol
standard Affymetrix procedure
Description
C03_21 CTRL liver 12 months
Data processing
Affymetrix Microarray Suite version 5.0 followed by GEA
Submission date
Jun 29, 2005
Last update date
May 22, 2007
Contact name
James Holzwarth
E-mail(s)
james.holzwarth@rdls.nestle.com
Phone
+41 21 785 8909
Organization name
Nestle Research Center
Department
Bioanalytical Sciences
Street address
vers chez les blanc
City
Lausanne
State/province
Vaud
ZIP/Postal code
1000
Country
Switzerland
Platform ID
GPL85
Series (2)
GSE2852
Ochratoxin A study on rat liver and kidney gene expression
GSE3304
Comparison of gene expression in conventional and germ-free intestine
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A) or marginal (M)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
1.86092
A
0.868639
AFFX-MurIL10_at
2.05967
A
0.699394
AFFX-MurIL4_at
0.28906
A
0.999611
AFFX-MurFAS_at
0.902349
A
0.686277
AFFX-BioB-5_at
54.5346
A
0.102165
AFFX-BioB-M_at
103.302
P
0.000753643
AFFX-BioB-3_at
43.5615
P
0.00401721
AFFX-BioC-5_at
198.032
P
0.000224668
AFFX-BioC-3_at
94.0672
P
0.000662269
AFFX-BioDn-5_at
176.809
P
0.0012475
AFFX-BioDn-3_at
994.244
P
0.000389797
AFFX-CreX-5_at
1646.64
P
4.43E-05
AFFX-CreX-3_at
2638.84
P
4.43E-05
AFFX-BioB-5_st
27.2714
A
0.116113
AFFX-BioB-M_st
17.3487
A
0.287743
AFFX-BioB-3_st
3.02225
A
0.860518
AFFX-BioC-5_st
3.45077
A
0.860518
AFFX-BioC-3_st
1.15275
A
0.910522
AFFX-BioDn-5_st
23.1199
A
0.205732
AFFX-BioDn-3_st
33.8072
A
0.139482
Total number of rows:
8799
Table truncated, full table size
283 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM62790.CEL.gz
1.8 Mb
(ftp)
(http)
CEL
GSM62790.EXP.gz
441 b
(ftp)
(http)
EXP
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