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Sample GSM629131 Query DataSets for GSM629131
Status Public on Jul 10, 2012
Title 16Q-TBP; first biological replicate; 36 hours post transfection
Sample type RNA
 
Source name Neuro2A cells
Organism Mus musculus
Characteristics strain: A
cell line: Neuro2A
tranfection: 16Q-TBP
replicate: first biological replicate
time point: 36 hours post transfection
Biomaterial provider ATCC
Treatment protocol Amaxa transfection
Extracted molecule total RNA
Extraction protocol Trizol
Label Cy3
Label protocol Manusfacturer's Instructions
 
Hybridization protocol Manusfacturer's Instructions
Scan protocol Manusfacturer's Instructions
Description transfection using Amaxa nucleofection as per manufacturer's instructions
Data processing Quantile normalization was performed after removing spots which were flagged by the signal well above Background criteria in the scan output file. The Software used is Avadis (version - 3.1).
 
Submission date Nov 24, 2010
Last update date Jul 10, 2012
Contact name REEMA ROSHAN
E-mail(s) reema.roshan@igib.in
Organization name INSTITUTE OF GENOMICS AND INTEGRATIVE BIOLOGY
Department FGU
Lab MOL. BIO
Street address A-93/94, IGIB, NARAINA INDUSTRIAL AREA, NARAINA
City NEW DELHI
ZIP/Postal code 110028
Country India
 
Platform ID GPL10235
Series (1)
GSE25592 Effect of polyglutamine expanded TBP on microRNA expression in Neuro2A cells

Data table header descriptions
ID_REF
VALUE Quantile normalized, background corrected, Log2 (signal intensity)

Data table
ID_REF VALUE
1 9.18925132
2 5.197291407
4 5.220194502
5 6.369089533
7 6.359612531
10 5.2345588
12 5.157456081
13 5.170986595
14 5.993031209
15 5.093112222
16 5.142552309
17 4.937151329
18 5.359496572
19 5.086962054
20 5.559730407
21 6.591217132
22 5.136125748
23 5.185307591
24 5.075275901
27 5.083277203

Total number of rows: 12553

Table truncated, full table size 210 Kbytes.




Supplementary file Size Download File type/resource
GSM629131.txt.gz 1.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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