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Sample GSM629135 Query DataSets for GSM629135
Status Public on Jul 10, 2012
Title 59Q-TBP; second biological replicate; 36 hours post transfection
Sample type RNA
 
Source name Neuro2A cells
Organism Mus musculus
Characteristics strain: A
cell line: Neuro2A
tranfection: 59Q-TBP
replicate: second biological replicate
time point: 36 hours post transfection
Biomaterial provider ATCC
Treatment protocol Amaxa transfection
Extracted molecule total RNA
Extraction protocol Trizol
Label Cy3
Label protocol Manusfacturer's Instructions
 
Hybridization protocol Manusfacturer's Instructions
Scan protocol Manusfacturer's Instructions
Description transfection using Amaxa nucleofection as per manufacturer's instructions
Data processing Quantile normalization was performed after removing spots which were flagged by the signal well above Background criteria in the scan output file. The Software used is Avadis (version - 3.1).
 
Submission date Nov 24, 2010
Last update date Jul 10, 2012
Contact name REEMA ROSHAN
E-mail(s) reema.roshan@igib.in
Organization name INSTITUTE OF GENOMICS AND INTEGRATIVE BIOLOGY
Department FGU
Lab MOL. BIO
Street address A-93/94, IGIB, NARAINA INDUSTRIAL AREA, NARAINA
City NEW DELHI
ZIP/Postal code 110028
Country India
 
Platform ID GPL10235
Series (1)
GSE25592 Effect of polyglutamine expanded TBP on microRNA expression in Neuro2A cells

Data table header descriptions
ID_REF
VALUE Quantile normalized, background corrected, Log2 (signal intensity)

Data table
ID_REF VALUE
1 10.53162514
2 5.388292878
4 5.378279247
5 6.539282909
7 6.612135724
10 5.347034871
12 5.294220047
13 5.663173809
14 5.885515796
15 5.237877247
16 5.32560948
17 5.236576805
18 5.279820412
19 5.216396659
20 5.494047529
21 5.862810904
22 5.17403483
23 5.436611612
24 5.21043952
27 5.286337818

Total number of rows: 12553

Table truncated, full table size 210 Kbytes.




Supplementary file Size Download File type/resource
GSM629135.txt.gz 1.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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