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Sample GSM62940 Query DataSets for GSM62940
Status Public on Jan 01, 2006
Title C. elegans_2_3
Sample type RNA
 
Source name egl-15::gfp; pRF4
Organism Caenorhabditis elegans
Characteristics No heat shock treatment
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description pRF4: is a transformation marker.
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Jul 01, 2005
Last update date Jul 01, 2005
Contact name WeiPing Chen
E-mail(s) weipingChen@niddk.nih.gov
Phone 301-496-0175
Organization name NIDDK/NIH
Department GCL
Lab Genomics Core Lab
Street address Bldg 8, Room 1A11, NIDDK/NIH
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL200
Series (1)
GSE2862 Twist Heat Shock in C. elegans

Data table header descriptions
ID_REF prob set id
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value',

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 231 P 0.023929
AFFX-BioB-M_at 305.6 P 0.001102
AFFX-BioB-3_at 183.1 P 0.002867
AFFX-BioC-5_at 402.9 P 0.00141
AFFX-BioC-3_at 306 P 0.001102
AFFX-BioDn-5_at 360.4 P 0.000147
AFFX-BioDn-3_at 2510.2 P 0.000052
AFFX-CreX-5_at 6105.3 P 0.000044
AFFX-CreX-3_at 7266.6 P 0.000044
AFFX-DapX-5_at 21.2 P 0.042962
AFFX-DapX-M_at 16.8 A 0.195266
AFFX-DapX-3_at 4.6 A 0.860518
AFFX-LysX-5_at 2.4 A 0.9273
AFFX-LysX-M_at 8.3 A 0.783476
AFFX-LysX-3_at 26.9 A 0.313723
AFFX-PheX-5_at 2.1 A 0.941556
AFFX-PheX-M_at 4.9 A 0.868639
AFFX-PheX-3_at 9 A 0.824672
AFFX-ThrX-5_at 6.2 A 0.897835
AFFX-ThrX-M_at 30.3 A 0.425962

Total number of rows: 22625

Table truncated, full table size 596 Kbytes.




Supplementary data files not provided

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