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Sample GSM637530 Query DataSets for GSM637530
Status Public on Feb 21, 2012
Title Muscle_Old_Female_31.0
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics tissue: Vastus lateralis muscle
age: Old
gender: Female
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description GPL750
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Dec 08, 2010
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE25941 Effects of age on the skeletal muscle transcriptome

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5310.02 P 4.42873e-05
AFFX-BioB-M_at 10678.9 P 4.42873e-05
AFFX-BioB-3_at 8463.08 P 4.42873e-05
AFFX-BioC-5_at 17179.2 P 4.42873e-05
AFFX-BioC-3_at 13479.2 P 4.42873e-05
AFFX-BioDn-5_at 32400.1 P 4.42873e-05
AFFX-BioDn-3_at 43064.7 P 4.42873e-05
AFFX-CreX-5_at 77746.5 P 5.16732e-05
AFFX-CreX-3_at 79967.3 P 4.42873e-05
AFFX-DapX-5_at 50.5104 A 0.216524
AFFX-DapX-M_at 8.62543 A 0.949771
AFFX-DapX-3_at 11.5194 A 0.852061
AFFX-LysX-5_at 5.52748 A 0.672921
AFFX-LysX-M_at 20.1505 A 0.574038
AFFX-LysX-3_at 9.60092 A 0.588627
AFFX-PheX-5_at 25.6431 A 0.737173
AFFX-PheX-M_at 45.0037 A 0.275146
AFFX-PheX-3_at 59.7718 A 0.425962
AFFX-ThrX-5_at 78.9609 A 0.139462
AFFX-ThrX-M_at 13.2709 A 0.686292

Total number of rows: 54675

Table truncated, full table size 1657 Kbytes.




Supplementary file Size Download File type/resource
GSM637530.CEL.gz 5.2 Mb (ftp)(http) CEL
GSM637530.CHP.gz 289.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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