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Sample GSM637535 Query DataSets for GSM637535
Status Public on Feb 21, 2012
Title Muscle_Young_Men_20.0
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics tissue: Vastus lateralis muscle
age: Young
gender: Male
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description GPL750
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Dec 08, 2010
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE25941 Effects of age on the skeletal muscle transcriptome

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5758.5 P 4.42873e-05
AFFX-BioB-M_at 10892.2 P 4.42873e-05
AFFX-BioB-3_at 8707.17 P 4.42873e-05
AFFX-BioC-5_at 18768.9 P 4.42873e-05
AFFX-BioC-3_at 12775.2 P 4.42873e-05
AFFX-BioDn-5_at 34196.1 P 4.42873e-05
AFFX-BioDn-3_at 51104.1 P 4.42873e-05
AFFX-CreX-5_at 98524 P 5.16732e-05
AFFX-CreX-3_at 92304.7 P 4.42873e-05
AFFX-DapX-5_at 39.1598 A 0.354453
AFFX-DapX-M_at 8.98746 A 0.897835
AFFX-DapX-3_at 12.3692 A 0.937087
AFFX-LysX-5_at 32.5417 A 0.250758
AFFX-LysX-M_at 29.9779 A 0.659352
AFFX-LysX-3_at 11.854 A 0.834139
AFFX-PheX-5_at 58.7232 A 0.275146
AFFX-PheX-M_at 43.7579 A 0.39692
AFFX-PheX-3_at 110.046 A 0.275129
AFFX-ThrX-5_at 11.0617 A 0.772364
AFFX-ThrX-M_at 6.82192 A 0.927318

Total number of rows: 54675

Table truncated, full table size 1655 Kbytes.




Supplementary file Size Download File type/resource
GSM637535.CEL.gz 5.0 Mb (ftp)(http) CEL
GSM637535.CHP.gz 292.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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