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Sample GSM637542 Query DataSets for GSM637542
Status Public on Feb 21, 2012
Title Muscle_Old_Men_32.0
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics tissue: Vastus lateralis muscle
age: Old
gender: Male
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description GPL750
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Dec 08, 2010
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE25941 Effects of age on the skeletal muscle transcriptome

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5972.05 P 4.42246e-05
AFFX-BioB-M_at 10946.5 P 4.42873e-05
AFFX-BioB-3_at 8753.05 P 4.42873e-05
AFFX-BioC-5_at 18572.8 P 4.42873e-05
AFFX-BioC-3_at 12980.3 P 4.42873e-05
AFFX-BioDn-5_at 34376.8 P 4.42873e-05
AFFX-BioDn-3_at 49378.7 P 4.42873e-05
AFFX-CreX-5_at 90327.2 P 5.16732e-05
AFFX-CreX-3_at 86494.1 P 4.42873e-05
AFFX-DapX-5_at 5.58643 A 0.425962
AFFX-DapX-M_at 2.41046 A 0.989689
AFFX-DapX-3_at 28.0936 A 0.686292
AFFX-LysX-5_at 49.5024 A 0.147918
AFFX-LysX-M_at 43.1735 A 0.239044
AFFX-LysX-3_at 2.05372 A 0.98746
AFFX-PheX-5_at 42.5852 A 0.425962
AFFX-PheX-M_at 6.8891 A 0.883887
AFFX-PheX-3_at 49.2085 A 0.340661
AFFX-ThrX-5_at 17.5945 A 0.559354
AFFX-ThrX-M_at 18.9986 A 0.749223

Total number of rows: 54675

Table truncated, full table size 1658 Kbytes.




Supplementary file Size Download File type/resource
GSM637542.CEL.gz 5.1 Mb (ftp)(http) CEL
GSM637542.CHP.gz 293.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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