|
Status |
Public on Jan 12, 2023 |
Title |
REDV_HBL1_BiolRep2 |
Sample type |
SRA |
|
|
Source name |
HBL1
|
Organism |
Homo sapiens |
Characteristics |
cell line: HBL1 cell type: Human diffuse large B-cell lymphoma treatment: REDV Matrix; No co-culture time: 4 days organoid culture
|
Extracted molecule |
total RNA |
Extraction protocol |
Sorted lymphoma cells were lysed and collected RNA by TRIzol
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Description |
REDV_HBL1_2_S25
|
Data processing |
Reads were trimmed using bcl2fastq. Trimmed sequence reads were mapped to hg38 using TopHat v2.1.1 Reads were counted within features using HTSeq v2.0.1 Assembly: NCBI hg38 Supplementary files format and content: BAM files of aligned reads Supplementary files format and content: tab-delimited matrix of raw counts
|
|
|
Submission date |
Jul 22, 2022 |
Last update date |
Jan 12, 2023 |
Contact name |
Lauren D Walter |
E-mail(s) |
ldw64@cornell.edu
|
Organization name |
Cornell University
|
Department |
Biomedical Engineering
|
Lab |
Cosgrove Laboratory
|
Street address |
161 Weill Hall
|
City |
Ithaca |
State/province |
NY |
ZIP/Postal code |
14853 |
Country |
USA |
|
|
Platform ID |
GPL24676 |
Series (1) |
GSE209551 |
Combinatorial treatment rescues tumour-microenvironment-mediated attenuation of MALT1 inhibitors in B-cell lymphomas |
|
Relations |
BioSample |
SAMN29894121 |
SRA |
SRX16459944 |