|
| Status |
Public on Jan 12, 2023 |
| Title |
REDV_HBL1_BiolRep2 |
| Sample type |
SRA |
| |
|
| Source name |
HBL1
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: HBL1
cell type: Human diffuse large B-cell lymphoma
treatment: REDV Matrix; No co-culture
time: 4 days organoid culture
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Sorted lymphoma cells were lysed and collected RNA by TRIzol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
REDV_HBL1_2_S25
|
| Data processing |
Reads were trimmed using bcl2fastq. Trimmed sequence reads were mapped to hg38 using TopHat v2.1.1
Reads were counted within features using HTSeq v2.0.1
Assembly: NCBI hg38
Supplementary files format and content: BAM files of aligned reads
Supplementary files format and content: tab-delimited matrix of raw counts
|
| |
|
| Submission date |
Jul 22, 2022 |
| Last update date |
Jan 12, 2023 |
| Contact name |
Lauren D Walter |
| E-mail(s) |
ldw64@cornell.edu
|
| Organization name |
Cornell University
|
| Department |
Biomedical Engineering
|
| Lab |
Cosgrove Laboratory
|
| Street address |
161 Weill Hall
|
| City |
Ithaca |
| State/province |
NY |
| ZIP/Postal code |
14853 |
| Country |
USA |
| |
|
| Platform ID |
GPL24676 |
| Series (1) |
| GSE209551 |
Combinatorial treatment rescues tumour-microenvironment-mediated attenuation of MALT1 inhibitors in B-cell lymphomas |
|
| Relations |
| BioSample |
SAMN29894121 |
| SRA |
SRX16459944 |
