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Sample GSM638347 Query DataSets for GSM638347
Status Public on Feb 15, 2011
Title ESI053P37_30_105_5_1
Sample type genomic
 
Source name Undifferentiated hESC
Organism Homo sapiens
Characteristics cell type: HESC
passage number: 37
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) gulsah@scripps.edu
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
ESI053P37_30_105_5_1.Score
ESI053P37_30_105_5_1.Theta
ESI053P37_30_105_5_1.R
ESI053P37_30_105_5_1.B Allele Freq
ESI053P37_30_105_5_1.Log R Ratio

Data table
ID_REF VALUE ESI053P37_30_105_5_1.Score ESI053P37_30_105_5_1.Theta ESI053P37_30_105_5_1.R ESI053P37_30_105_5_1.B Allele Freq ESI053P37_30_105_5_1.Log R Ratio
200006 NC 0.1098962 0.8987662 1.92598 0.9200673 0.05462353
200052 BB 0.9487 0.9934461 0.7366149 1 -0.3907634
200053 AA 0.6644778 0.1087666 1.501681 0.03291553 -0.1073695
200070 BB 0.9347444 0.9653146 0.5088472 0.9703781 -0.4760122
200078 NC 0.05476734 0.1926326 2.131751 0.1291115 0.08093347
200087 AB 0.8075385 0.6519594 1.322196 0.6235176 -0.152066
200096 BB 0.9041256 0.9903483 1.005903 1 -0.1351753
200124 BB 0.877098 0.9786367 0.9592304 1 -0.1402827
200199 AA 0.9437442 0.03809915 0.9428925 0.01427718 -0.2018588
400630 AA 0.8781115 0.00 0.6221046 0.00 -0.1891132
401327 AA 0.7911681 0.1079833 0.9967682 0.05329609 0.1813215
401753 AB 0.630483 0.4981173 1.34062 0.5087876 -0.3715863
500301 BB 0.9310601 0.9718596 0.9821915 0.9900525 -0.2381751
500556 AA 0.8120589 0.09818253 0.915516 0.04545385 0.03786914
500660 AA 0.5118521 0.01750114 1.138526 0.00 0.06392315
500694 AB 0.715772 0.3877595 1.241527 0.5167348 -0.2493231
500710 AB 0.7286785 0.4640429 1.782964 0.4754289 0.0954553
ABO_SNP1 BB 0.3991952 0.9773635 1.829432 1 0.1974615
DI_SNP1 BB 0.5118521 0.9803468 0.9736543 1 -0.1250476
FY_SNP2 BB 0.4958491 0.9750028 1.053509 1 0.2202468

Total number of rows: 1048713

Table truncated, full table size 62038 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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