|
| Status |
Public on Jan 27, 2011 |
| Title |
liver3 [gene-level] |
| Sample type |
RNA |
| |
|
| Source name |
Human Liver Total RNA (Ambion)
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Liver
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Ambion/Applied Biosystems WT Expression Kit, refer to http://gluegrant1.stanford.edu/~DIC/GGHarray/GGHprotocol.html for details
|
| Label |
biotin
|
| Label protocol |
Affymetrix GeneChip WT Terminal Labeling Kit, refer to http://gluegrant1.stanford.edu/~DIC/GGHarray/GGHprotocol.html for details
|
| |
|
| Hybridization protocol |
Follow Affymetrix Standard Protocol
|
| Scan protocol |
Affymetrix Gene ChIP Scanner 30007G
|
| Data processing |
Data processing using Affymetrix Power Tools (APT). Arrays were RMA-background-corrected, quantile-normlized and summarized into exon/gene expression using median-polish
probe group file: hGlue2_0.r1.pgf
meta-probeset file: hGlue2_0.r1.TC.mps
|
| |
|
| Submission date |
Dec 15, 2010 |
| Last update date |
Jan 27, 2011 |
| Contact name |
Weihong Xu |
| E-mail(s) |
weihongx@stanford.edu
|
| Organization name |
Stanford Genome Technology Center
|
| Department |
Department of Biochemistry
|
| Lab |
Ron W. Davis
|
| Street address |
855 California Ave
|
| City |
Palo Alto |
| State/province |
CA |
| ZIP/Postal code |
94304 |
| Country |
USA |
| |
|
| Platform ID |
GPL11320 |
| Series (2) |
| GSE26072 |
A human transcriptome array for high-throughput clinical studies (with a comparison to RNA-seq technology) [expression array] |
| GSE26118 |
A human transcriptome array for high-throughput clinical studies (with a comparison to RNA-seq technology) |
|
| Relations |
| Alternative to |
GSM640130 (exon-level analysis) |
