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GEO accession:
Sample GSM640363
Query DataSets for GSM640363
Status
Public on Dec 29, 2010
Title
ERa-EGF ChIP-Chip Array F rep3
Sample type
genomic
Channel 1
Source name
ERa ChIP DNA
Organism
Homo sapiens
Characteristics
agent: EGF treated MCF7 breast cancer cells
fraction: ChIP
Treatment protocol
Described in method section:
http://www.ncbi.nlm.nih.gov/pubmed/20889718
Growth protocol
Described in method section:
http://www.ncbi.nlm.nih.gov/pubmed/20889718
Extracted molecule
genomic DNA
Extraction protocol
Described in method section:
http://www.ncbi.nlm.nih.gov/pubmed/20889718
Label
biotin
Label protocol
Described in method section:
http://www.ncbi.nlm.nih.gov/pubmed/20889718
Channel 2
Source name
Input DNA
Organism
Homo sapiens
Characteristics
reference: Input DNA from same sample used for ChIP against ERa
Treatment protocol
Described in method section:
http://www.ncbi.nlm.nih.gov/pubmed/20889718
Growth protocol
Described in method section:
http://www.ncbi.nlm.nih.gov/pubmed/20889718
Extracted molecule
genomic DNA
Extraction protocol
Described in method section:
http://www.ncbi.nlm.nih.gov/pubmed/20889718
Label
biotin
Label protocol
Described in method section:
http://www.ncbi.nlm.nih.gov/pubmed/20889718
Hybridization protocol
Described in method section:
http://www.ncbi.nlm.nih.gov/pubmed/20889718
Scan protocol
Described in method section:
http://www.ncbi.nlm.nih.gov/pubmed/20889718
Description
result file: ERa_inpEGF_MCF7_n3_Hg18_F20.Hs35b_P06R_v01-3_NCBIv36.NR.bpmap_matscore.bar
Data processing
Described in method section:
http://www.ncbi.nlm.nih.gov/pubmed/20889718
BAR files derived from MAT analysis on Hg18 for ChIP-chip samples.
Submission date
Dec 15, 2010
Last update date
Dec 29, 2010
Contact name
Mathieu Lupien
E-mail(s)
mathieu.lupien@dartmouth.edu
Phone
603-653-9041
Organization name
Norris Cotton Cancer Center/Dartmouth Medical School
Department
Genetics
Street address
One Medical Center Drive
City
Lebanon
State/province
NH
ZIP/Postal code
03756
Country
USA
Platform ID
GPL4915
Series (1)
GSE26081
Growth Factor Stimulation Induces a Distinct ERĪ± Cistrome Underlying Breast Cancer Endocrine Resistance
Supplementary file
Size
Download
File type/resource
GSM640363_3F_ERa_90_M125G_Hs7F.CEL.gz
24.9 Mb
(ftp)
(http)
CEL
Processed data are available on Series record
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