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Sample GSM642655 Query DataSets for GSM642655
Status Public on Mar 31, 2011
Title doberman
Sample type genomic
 
Channel 1
Source name Doberman Pinscher
Organism Canis lupus familiaris
Characteristics breed: Doberman Pinscher
Extracted molecule genomic DNA
Extraction protocol Standard NimbleGen protocols
Label Cy3
Label protocol Standard NimbleGen protocols
 
Channel 2
Source name Boxer
Organism Canis lupus familiaris
Characteristics breed: Boxer
Extracted molecule genomic DNA
Extraction protocol Standard NimbleGen protocols
Label Cy5
Label protocol Standard NimbleGen protocols
 
 
Hybridization protocol Standard NimbleGen protocols
Scan protocol Standard NimbleGen protocols
Data processing Standard NimbleGen protocols using NimbleScan software.
 
Submission date Dec 18, 2010
Last update date Mar 31, 2011
Contact name Tom Nicholas
E-mail(s) tjn3@u.washington.edu
Organization name University of Washington
Street address Foege Building S-250, Box 355065 3720 15th Ave NE
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL11335
Series (1)
GSE26170 Genome-wide CNVs within and between breeds

Data table header descriptions
ID_REF
VALUE scaled, log2 ratios (Cy3/Cy5)

Data table
ID_REF VALUE
CHR01FS003000891 -0.265
CHR01FS003002366 0.058
CHR01FS003006126 0.124
CHR01FS003008426 0.234
CHR01FS003009706 0.234
CHR01FS003015159 0.281
CHR01FS003019675 -0.116
CHR01FS003021107 0.324
CHR01FS003022577 0.351
CHR01FS003029599 0.379
CHR01FS003030794 0.458
CHR01FS003031929 0.069
CHR01FS003032959 0.081
CHR01FS003038014 0.175
CHR01FS003039559 0.337
CHR01FS003042089 0.195
CHR01FS003043866 -0.011
CHR01FS003044907 0.199
CHR01FS003046077 0.222
CHR01FS003047027 -0.005

Total number of rows: 2164507

Table truncated, full table size 49510 Kbytes.




Supplementary file Size Download File type/resource
GSM642655_24371102_532.pair.gz 35.1 Mb (ftp)(http) PAIR
GSM642655_24371102_635.pair.gz 35.0 Mb (ftp)(http) PAIR
Processed data included within Sample table

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