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Sample GSM642656 Query DataSets for GSM642656
Status Public on Mar 31, 2011
Title gshepherd
Sample type genomic
 
Channel 1
Source name German Shepherd
Organism Canis lupus familiaris
Characteristics breed: German Shepherd
Extracted molecule genomic DNA
Extraction protocol Standard NimbleGen protocols
Label Cy3
Label protocol Standard NimbleGen protocols
 
Channel 2
Source name Boxer
Organism Canis lupus familiaris
Characteristics breed: Boxer
Extracted molecule genomic DNA
Extraction protocol Standard NimbleGen protocols
Label Cy5
Label protocol Standard NimbleGen protocols
 
 
Hybridization protocol Standard NimbleGen protocols
Scan protocol Standard NimbleGen protocols
Data processing Standard NimbleGen protocols using NimbleScan software.
 
Submission date Dec 18, 2010
Last update date Mar 31, 2011
Contact name Tom Nicholas
E-mail(s) tjn3@u.washington.edu
Organization name University of Washington
Street address Foege Building S-250, Box 355065 3720 15th Ave NE
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL11335
Series (1)
GSE26170 Genome-wide CNVs within and between breeds

Data table header descriptions
ID_REF
VALUE scaled, log2 ratios (Cy3/Cy5)

Data table
ID_REF VALUE
CHR01FS003000891 0.388
CHR01FS003002366 -0.260
CHR01FS003006126 0.034
CHR01FS003008426 -0.099
CHR01FS003009706 -0.085
CHR01FS003015159 0.249
CHR01FS003019675 -0.137
CHR01FS003021107 0.278
CHR01FS003022577 0.118
CHR01FS003029599 -0.101
CHR01FS003030794 -0.186
CHR01FS003031929 0.010
CHR01FS003032959 -0.555
CHR01FS003038014 0.430
CHR01FS003039559 0.394
CHR01FS003042089 0.212
CHR01FS003043866 -0.245
CHR01FS003044907 0.517
CHR01FS003046077 0.269
CHR01FS003047027 -0.531

Total number of rows: 2164507

Table truncated, full table size 49542 Kbytes.




Supplementary file Size Download File type/resource
GSM642656_24087502_532.pair.gz 35.1 Mb (ftp)(http) PAIR
GSM642656_24087502_635.pair.gz 35.0 Mb (ftp)(http) PAIR
Processed data included within Sample table

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