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Sample GSM642657 Query DataSets for GSM642657
Status Public on Mar 31, 2011
Title lab
Sample type genomic
 
Channel 1
Source name Labrador Retriever
Organism Canis lupus familiaris
Characteristics breed: Labrador Retriever
Extracted molecule genomic DNA
Extraction protocol Standard NimbleGen protocols
Label Cy3
Label protocol Standard NimbleGen protocols
 
Channel 2
Source name Boxer
Organism Canis lupus familiaris
Characteristics breed: Boxer
Extracted molecule genomic DNA
Extraction protocol Standard NimbleGen protocols
Label Cy5
Label protocol Standard NimbleGen protocols
 
 
Hybridization protocol Standard NimbleGen protocols
Scan protocol Standard NimbleGen protocols
Data processing Standard NimbleGen protocols using NimbleScan software.
 
Submission date Dec 18, 2010
Last update date Mar 31, 2011
Contact name Tom Nicholas
E-mail(s) tjn3@u.washington.edu
Organization name University of Washington
Street address Foege Building S-250, Box 355065 3720 15th Ave NE
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL11335
Series (1)
GSE26170 Genome-wide CNVs within and between breeds

Data table header descriptions
ID_REF
VALUE scaled, log2 ratios (Cy3/Cy5)

Data table
ID_REF VALUE
CHR01FS003000891 -0.209
CHR01FS003002366 -0.225
CHR01FS003006126 -0.007
CHR01FS003008426 -0.794
CHR01FS003009706 0.217
CHR01FS003015159 0.235
CHR01FS003019675 0.011
CHR01FS003021107 0.133
CHR01FS003022577 0.009
CHR01FS003029599 0.228
CHR01FS003030794 0.022
CHR01FS003031929 0.096
CHR01FS003032959 -0.017
CHR01FS003038014 0.149
CHR01FS003039559 0.254
CHR01FS003042089 0.111
CHR01FS003043866 0.036
CHR01FS003044907 -0.042
CHR01FS003046077 0.578
CHR01FS003047027 -0.082

Total number of rows: 2164507

Table truncated, full table size 49522 Kbytes.




Supplementary file Size Download File type/resource
GSM642657_24101202_532.pair.gz 34.9 Mb (ftp)(http) PAIR
GSM642657_24101202_635.pair.gz 34.8 Mb (ftp)(http) PAIR
Processed data included within Sample table

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