|
| Status |
Public on Aug 05, 2022 |
| Title |
Sample20.eRapa.205844020049_R02C02 |
| Sample type |
genomic |
| |
|
| Source name |
Liver
|
| Organism |
Mus musculus |
| Characteristics |
age: 2.4
Sex: Female
tissue: Liver
agemonths: 28.8
treatment: eRapa
platenumber: Plate 01
welladdress: D03
dna.concentration: 24.52
dna.volume: 30
|
| Treatment protocol |
Standard Illumina Protocol
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
genomic DNA methylation from tissue=Liver species=Mouse
|
| Data processing |
SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
|
| |
|
| Submission date |
Aug 02, 2022 |
| Last update date |
Aug 05, 2022 |
| Contact name |
Steve Horvath |
| E-mail(s) |
shorvath@altoslabs.com
|
| Organization name |
University of California, Los Angeles
|
| Department |
Human Genetics
|
| Lab |
Horvath
|
| Street address |
695 Charles E. Young Drive South, Box 708822
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095-7088 |
| Country |
USA |
| |
|
| Platform ID |
GPL32543 |
| Series (1) |
| GSE210308 |
Methylation study of rapamycin treatment during development in mice |
|
