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Sample GSM6431574 Query DataSets for GSM6431574
Status Public on Aug 06, 2022
Title vehicle 5 at 6H,spleen
Sample type RNA
 
Source name vehicle 5 at 6H
Organism Rattus
Characteristics strain: Sprague Dawley
tissue: spleen
group: vehicle 5
Treatment protocol The rats were randomly divided into 3 groups according to a uniform design (n=3/group): 6h sham group, 6h vehicle control group, 6h YJ groups (25mg•kg−1). The sham operation group was subjected to only preoperative anesthesia and blood vessel separation; the other groups were subjected to the MCAO model. The animals were sacrificed to obtain brain, spleen and blood respectively. Furthermore, brains and spleens were made as homogenate and white blood cells were separated from whole blood for further tests.
Growth protocol All animals were housed individually at 22 ± 2 °C with a relative humidity of 50 ± 10% and a 12-h light/12-h dark cycle.The animals were kept in a pathogen-free environment with free access to food and water.
Extracted molecule total RNA
Extraction protocol Extraction of total RNA was performed according to the manufacturer's instructions of Qiagen RNA kit.
Label biotin
Label protocol M-MLV reverse transcription (Promega) was used to synthesize cDNA.
 
Hybridization protocol Total RNA was reverse transcribed, amplified, labelled and hybridized to Rat Genome 1.0 arrays (Affymetrix).
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000 7G.
Description D5-6h(pi)
Data processing The data were analyzed with RMA using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
 
Submission date Aug 04, 2022
Last update date Aug 06, 2022
Contact name Liming Liu
E-mail(s) liuliming2022@126.com
Phone 18813067753
Organization name Institute of Chinese Materia Medica,China Academy of Chinese Medical Sciences
Street address 16 Dongzhimen nei south street, Dongcheng District, Beijing, China
City Beijing
ZIP/Postal code 100700
Country China
 
Platform ID GPL6247
Series (1)
GSE210512 The network Regulation of Yiqi Jiedu Formulae against Cerebral Ischemia Based on Central-periphery Inflammation System

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
10937574 4.38
10831790 6.03
10788139 6.25
10939890 7.06
10790538 3.49
10791702 5.33
10841487 5.19
10937174 7.1
10729002 5.08
10900071 2.36
10723475 3.5
10896004 7.52
10924444 5.49
10748205 5.95
10817629 4.98
10908182 6.03
10828913 6.96
10940660 5.67
10740278 6.79
10930606 3.11

Total number of rows: 27596

Table truncated, full table size 374 Kbytes.




Supplementary file Size Download File type/resource
GSM6431574_D5-6h_pi_RaGene-1_0-st-v1_.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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