|
| Status |
Public on Jan 17, 2023 |
| Title |
Virus Detected 164 |
| Sample type |
genomic |
| |
|
| Source name |
Trachael Aspirate
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: virus detected
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Clinical specimens of nasopharyngeal swabs were collected in a viral transport medium. DNA was extracted from viral transport medium or directly from tracheal aspirates by Maxwell® RSC Blood DNA Kit per manufacturer's instructions (Promega Corporation). RNase A was added to samples to remove potential viral RNA. Isolated genomic DNA was quantified by NanoDrop™ One/OneC Microvolume UV-Vis Spectrophotometer (Thermo Scientific).
|
| Label |
n.a.
|
| Label protocol |
Total Genomic DNA were extracted, no label needed
|
| |
|
| Hybridization protocol |
Genotyping was done using Axiom™ Human Genotyping SARS-CoV-2 Research Array as instructed by the manufacturer (Thermo Scientific).
|
| Scan protocol |
The scanning was performed by UF ICBR core using GeneTitan MC Instrument.
|
| Description |
After the exclusion of samples during quality control, the final case-control data sets comprised 254 patients and 80 control participants. The samples with disclosures in the table are those that have passed QC and population stratification.
|
| Data processing |
Axiom Analysis Suite (Thermo Scientific) was used to process the raw data.
|
| |
|
| Submission date |
Aug 24, 2022 |
| Last update date |
Jan 19, 2023 |
| Contact name |
Cuong Nguyen |
| E-mail(s) |
nguyenc@ufl.edu
|
| Organization name |
University of Florida
|
| Street address |
2015 SW 16th Ave
|
| City |
Gainesville |
| State/province |
Florida |
| ZIP/Postal code |
32608 |
| Country |
USA |
| |
|
| Platform ID |
GPL32596 |
| Series (1) |
|
