|
Status |
Public on Jan 17, 2023 |
Title |
Virus Detected 172 |
Sample type |
genomic |
|
|
Source name |
Saliva
|
Organism |
Homo sapiens |
Characteristics |
disease state: virus detected age: 19 Sex: M race: EUR
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Clinical specimens of nasopharyngeal swabs were collected in a viral transport medium. DNA was extracted from viral transport medium or directly from tracheal aspirates by Maxwell® RSC Blood DNA Kit per manufacturer's instructions (Promega Corporation). RNase A was added to samples to remove potential viral RNA. Isolated genomic DNA was quantified by NanoDrop™ One/OneC Microvolume UV-Vis Spectrophotometer (Thermo Scientific).
|
Label |
n.a.
|
Label protocol |
Total Genomic DNA were extracted, no label needed
|
|
|
Hybridization protocol |
Genotyping was done using Axiom™ Human Genotyping SARS-CoV-2 Research Array as instructed by the manufacturer (Thermo Scientific).
|
Scan protocol |
The scanning was performed by UF ICBR core using GeneTitan MC Instrument.
|
Description |
After the exclusion of samples during quality control, the final case-control data sets comprised 254 patients and 80 control participants. The samples with disclosures in the table are those that have passed QC and population stratification.
|
Data processing |
Axiom Analysis Suite (Thermo Scientific) was used to process the raw data.
|
|
|
Submission date |
Aug 24, 2022 |
Last update date |
Jan 19, 2023 |
Contact name |
Cuong Nguyen |
E-mail(s) |
nguyenc@ufl.edu
|
Organization name |
University of Florida
|
Street address |
2015 SW 16th Ave
|
City |
Gainesville |
State/province |
Florida |
ZIP/Postal code |
32608 |
Country |
USA |
|
|
Platform ID |
GPL32596 |
Series (1) |
|