|
| Status |
Public on Dec 20, 2011 |
| Title |
DGE_dic9-20_3 |
| Sample type |
SRA |
| |
|
| Source name |
Bone marrow
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: acute lymphoblastic leukemia (ALL)
all lineage: B-cell precursor (BCP) ALL
bcp all subtype: dic(9;20)
tissue: Bone marrow
|
| Extracted molecule |
total RNA |
| Extraction protocol |
DGE-Tag Profiling NlaIII sample prep kit from Illumina
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Data processing |
Image analysis and base calling were performed with Illumina pipeline v1.4. The processed data (see data table below and supplementary file on the Series record) contains the trimmed, quality filtered, unique 17bp reads (column 1) and the frequency of each tag in transcripts per million (TPM) for each sample. Custom perl scripts were used to generate the processed data file.
|
| |
|
| Submission date |
Jan 10, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Jessica Nordlund |
| E-mail(s) |
jessica.nordlund@medsci.uu.se
|
| Phone |
+46186114912
|
| Organization name |
Uppsala University
|
| Department |
Medical Sciences
|
| Lab |
Molecular Medicine
|
| Street address |
Academic Hospital, Entrance 70, 3rd floor
|
| City |
Uppsala |
| ZIP/Postal code |
75185 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL9115 |
| Series (2) |
| GSE26530 |
Digital gene expression profiling of primary acute lymphoblastic leukemia cells |
| GSE26878 |
Digital gene and expression profiling of primary acute lymphoblastic leukemia (ALL) cells |
|
| Relations |
| SRA |
SRX037915 |
| BioSample |
SAMN00190768 |
