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Sample GSM65720 Query DataSets for GSM65720
Status Public on Sep 21, 2005
Title HSC_collagen_2
Sample type RNA
 
Source name cord blood
Organism Homo sapiens
Characteristics CD34+ cells isolated from umbilical cord blood, cultured in collagen I gels
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit
Label Biotin/Streptavidin Phycoerythrin
Label protocol Affymetrix GeneChip Eukaryotic Small Sample Target Labeling Assay Version II, starting the first amplification cycle with 100ng total RNA
 
Hybridization protocol Standard Affymetrix hybridization protocol for eukaryotic samples
Scan protocol Affymetrix standard procedure
Description further details in Oswald et al. "Gene expression profiling of CD34+ hematopoietic cells expanded in a collagen I matrix"
Data processing Affymetrix MAS 5.0, global scaling strategy, TGT 500
 
Submission date Jul 26, 2005
Last update date Sep 21, 2005
Contact name Martin Bornhaeuser
E-mail(s) martin.bornhaeuser@uniklinikum-dresden.de
Phone ++49-351-458-4704
Fax ++49-351-458-5389
Organization name Universitätsklinikum Carl Gustav Carus
Department Med. Klinik und Poliklinik
Street address Fetscherstrasse 74
City Dresden
ZIP/Postal code 01307
Country Germany
 
Platform ID GPL96
Series (1)
GSE3003 Gene expression profiling of CD34+ hematopoietic cells expanded in a collagen I matrix

Data table header descriptions
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 241 P 0.004017
AFFX-BioB-M_at 412.1 P 0.000081
AFFX-BioB-3_at 208.5 P 0.000662
AFFX-BioC-5_at 775.8 P 0.00011
AFFX-BioC-3_at 455.3 P 0.00011
AFFX-BioDn-5_at 937.2 P 0.00006
AFFX-BioDn-3_at 4266 P 0.000081
AFFX-CreX-5_at 7084.3 P 0.000044
AFFX-CreX-3_at 11031.2 P 0.000044
AFFX-DapX-5_at 6.9 A 0.41138
AFFX-DapX-M_at 23.9 A 0.340661
AFFX-DapX-3_at 11.1 A 0.814869
AFFX-LysX-5_at 8.3 A 0.425962
AFFX-LysX-M_at 15.4 A 0.60308
AFFX-LysX-3_at 25.9 A 0.139482
AFFX-PheX-5_at 1.9 A 0.976071
AFFX-PheX-M_at 4.1 A 0.876428
AFFX-PheX-3_at 58.6 A 0.39692
AFFX-ThrX-5_at 3.8 A 0.910522
AFFX-ThrX-M_at 22.6 A 0.354453

Total number of rows: 22283

Table truncated, full table size 591 Kbytes.




Supplementary data files not provided

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