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Sample GSM65721 Query DataSets for GSM65721
Status Public on Sep 21, 2005
Title HSC_collagen_3
Sample type RNA
 
Source name cord blood
Organism Homo sapiens
Characteristics CD34+ cells isolated from umbilical cord blood, cultured in collagen I gels
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit
Label Biotin/Streptavidin Phycoerythrin
Label protocol Affymetrix GeneChip Eukaryotic Small Sample Target Labeling Assay Version II, starting the first amplification cycle with 100ng total RNA
 
Hybridization protocol Standard Affymetrix hybridization protocol for eukaryotic samples
Scan protocol Affymetrix standard procedure
Description further details in Oswald et al. "Gene expression profiling of CD34+ hematopoietic cells expanded in a collagen I matrix"
Data processing Affymetrix MAS 5.0, global scaling strategy, TGT 500
 
Submission date Jul 26, 2005
Last update date Sep 21, 2005
Contact name Martin Bornhaeuser
E-mail(s) martin.bornhaeuser@uniklinikum-dresden.de
Phone ++49-351-458-4704
Fax ++49-351-458-5389
Organization name Universitätsklinikum Carl Gustav Carus
Department Med. Klinik und Poliklinik
Street address Fetscherstrasse 74
City Dresden
ZIP/Postal code 01307
Country Germany
 
Platform ID GPL96
Series (1)
GSE3003 Gene expression profiling of CD34+ hematopoietic cells expanded in a collagen I matrix

Data table header descriptions
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 271.7 P 0.002556
AFFX-BioB-M_at 448.1 P 0.00006
AFFX-BioB-3_at 232.3 P 0.00011
AFFX-BioC-5_at 800.3 P 0.000095
AFFX-BioC-3_at 603.2 P 0.000095
AFFX-BioDn-5_at 963.8 P 0.000052
AFFX-BioDn-3_at 4842.5 P 0.00007
AFFX-CreX-5_at 7367.7 P 0.000044
AFFX-CreX-3_at 13311.2 P 0.000044
AFFX-DapX-5_at 13.2 A 0.239063
AFFX-DapX-M_at 16.8 A 0.300606
AFFX-DapX-3_at 27.4 A 0.313723
AFFX-LysX-5_at 1.4 A 0.941556
AFFX-LysX-M_at 10.1 A 0.672921
AFFX-LysX-3_at 7.3 A 0.52976
AFFX-PheX-5_at 2.6 A 0.957038
AFFX-PheX-M_at 1 A 0.966323
AFFX-PheX-3_at 66.9 A 0.131361
AFFX-ThrX-5_at 4.5 A 0.945787
AFFX-ThrX-M_at 29.2 A 0.39692

Total number of rows: 22283

Table truncated, full table size 591 Kbytes.




Supplementary data files not provided

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