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Sample GSM6578413 Query DataSets for GSM6578413
Status Public on Sep 14, 2022
Title SingleCellM1
Sample type SRA
 
Source name tumour
Organism Mus musculus
Characteristics age: 8-9 weeks
gender: f
extract protocol: gentleMACS
tumour type: AB1-HA
strain: balb/c
timepoint: d0
Treatment protocol N/A
Growth protocol Subcutaneous tumour
Extracted molecule total RNA
Extraction protocol 4 samples with gentleMACS system (Miltenyi Biotec) and other 4 with via frozen tumour dissociation with Trizol followed by chloroform extraction and purification using RNeasy MinElute
Illumina 50bp single-end sequencing
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Data processing read alignment with Kallisto
count quantification with sleuth
sleuth_to_matrix
Assembly: GRCm38.p6
Supplementary files format and content: txt files in compressed gz format
 
Submission date Sep 13, 2022
Last update date Sep 14, 2022
Contact name Wee Loong Chin
Organization name National Centre For Asbestos Related Diseases
Street address Level 5, Qq Block, Qeii Medical Centre 6 Verdun St, Nedlands
City Perth
ZIP/Postal code 6009
Country Australia
 
Platform ID GPL13112
Series (2)
GSE153943 Dynamic IFN╬▓ signalling underlies treatment response to immune checkpoint therapy in cancer
GSE213296 Time-course bulk RNAseq and single-cell RNAseq of murine AB1 mesothelioma and Renca renal cancer following immune checkpoint therapy
Relations
BioSample SAMN30838596
SRA SRX17556763

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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