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Sample GSM6598117 Query DataSets for GSM6598117
Status Public on Sep 24, 2022
Title Genomic DNA from cultured pancreatic exocrine cells [BA0412_03]
Sample type genomic
 
Source name pancreatic exocrine cells
Organism Mus musculus
Characteristics weight: normal weight
Sex: female
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was prepared according to a standard protocol using commercially available kit (NucleoSpin, Takara Bio.)
Label Dinitrophenol and Biotin
Label protocol Illumina Infinium HD methylation assay, Manual protocol
 
Hybridization protocol Illumina Infinium HD methylation assay, Manual protocol
Scan protocol Scan was performed using iScan (version 4.0.0.147) and library (version 3.8.117)
Description pancreatic exocrine cells from normal-fat diet fed mouse
Data processing Data was processed by GenomeStudio (v2011.1) and methylation module (1.9.0)
 
Submission date Sep 23, 2022
Last update date Sep 24, 2022
Contact name Tomoyuki Araki
E-mail(s) arayuki@saitama-med.ac.jp
Organization name Saitama medical university
Lab Biochemistry
Street address morohongo38
City moroyama-machi
ZIP/Postal code 3500495
Country Japan
 
Platform ID GPL32685
Series (1)
GSE214033 Epigenome-wide association analysis of pancreatic exocrine cells from High Fat dietary and normal dietary mice.

Data table header descriptions
ID_REF
VALUE Average Beta
BA0412_03.Detection Pval

Data table
ID_REF VALUE BA0412_03.Detection Pval
cg00101675_BC21 0.7366031 0
cg00116289_BC21 0.6915376 0
cg00211372_TC21 0.701357 0
cg00531009_BC21 0.7835727 0
cg00747726_TC21 0.7904062 0
cg00896209_TC21 0.7515001 0
cg00910419_BC21 0.04947924 0
cg00920372_BC21 0.3156278 0
cg01326836_BC21 0.1232879 0
cg01340195_BC21 0.6667876 0
cg01603043_TC21 0.4571803 0
cg01613817_BC11 0.5402075 0
cg01683044_BC21 0.03540761 0
cg02153806_BC21 0.1623811 0
cg02176373_BC21 0.07056211 0
cg02187860_TC21 0.6983849 0
cg02245762_BC11 0.2906526 0
cg02258130_TC21 0.3165834 0
cg02380775_BC21 0.6968934 0
cg02529685_TC11 0.9140027 0

Total number of rows: 287050

Table truncated, full table size 7876 Kbytes.




Supplementary file Size Download File type/resource
GSM6598117_206064380004_R03C01_Grn.idat.gz 2.5 Mb (ftp)(http) IDAT
GSM6598117_206064380004_R03C01_Red.idat.gz 2.5 Mb (ftp)(http) IDAT
Processed data included within Sample table

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