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Sample GSM6603332 Query DataSets for GSM6603332
Status Public on Aug 08, 2023
Title PERU3020
Sample type genomic
 
Source name Blood
Organism Homo sapiens
Characteristics sample type: Patient
gender: Female
age: 2
mutation type: Homozygous
mutation: p.Thr72Cysfs*2
Extracted molecule genomic DNA
Extraction protocol Standard Illumina Protocol
Label CGL2 patient PERU family 3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulfite converted DNA was amplified, fragmented and hybridised to IIllumina Infinium EPIC Human Methylation Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Standard Illumina Protocol
 
Submission date Sep 27, 2022
Last update date Aug 08, 2023
Contact name Nady el Hajj
E-mail(s) nelhajj@hbku.edu.qa
Organization name Hamad Bin Khalifa university
Street address Education City
City Doha
ZIP/Postal code 34110
Country Qatar
 
Platform ID GPL21145
Series (1)
GSE214297 Accelerated Epigenetic Aging and DNA Methylation Alterations in Berardinelli-Seip Congenital Lipodystrophy

Data table header descriptions
ID_REF
VALUE Average Beta value

Data table
ID_REF VALUE
cg00000029 0.418377197
cg00000109 0.841196698
cg00000165 0.13506082
cg00000221 0.809798513
cg00000236 0.648317856
cg00000289 0.778341751
cg00000363 0.258970723
cg00000540 0.80949462
cg00000579 0.899715692
cg00000622 0.04798135
cg00000658 0.724420686
cg00000714 0.199027385
cg00000721 0.859358848
cg00000734 0.069256186
cg00000765 0.863358587
cg00000769 0.062204131
cg00000905 0.06121114
cg00000924 0.425271044
cg00000948 0.762304474
cg00000974 0.040658341

Total number of rows: 518474

Table truncated, full table size 11589 Kbytes.




Supplementary file Size Download File type/resource
GSM6603332_204088150159_R07C01_Grn.idat.gz 7.0 Mb (ftp)(http) IDAT
GSM6603332_204088150159_R07C01_Red.idat.gz 7.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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