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Sample GSM6603335 Query DataSets for GSM6603335
Status Public on Aug 08, 2023
Title PERU1010
Sample type genomic
 
Source name Blood
Organism Homo sapiens
Characteristics sample type: Patient
gender: Female
age: 7
mutation type: Homozygous
mutation: p.Thr72Cysfs*2
Extracted molecule genomic DNA
Extraction protocol Standard Illumina Protocol
Label CGL2 patient PERU family 1
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulfite converted DNA was amplified, fragmented and hybridised to IIllumina Infinium EPIC Human Methylation Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Standard Illumina Protocol
 
Submission date Sep 27, 2022
Last update date Aug 08, 2023
Contact name Nady el Hajj
E-mail(s) nelhajj@hbku.edu.qa
Organization name Hamad Bin Khalifa university
Street address Education City
City Doha
ZIP/Postal code 34110
Country Qatar
 
Platform ID GPL21145
Series (1)
GSE214297 Accelerated Epigenetic Aging and DNA Methylation Alterations in Berardinelli-Seip Congenital Lipodystrophy

Data table header descriptions
ID_REF
VALUE Average Beta value

Data table
ID_REF VALUE
cg00000029 0.497802012
cg00000109 0.83896653
cg00000165 0.127260697
cg00000221 0.77727091
cg00000236 0.721523001
cg00000289 0.755395361
cg00000363 0.280723719
cg00000540 0.789464262
cg00000579 0.897153004
cg00000622 0.045570709
cg00000658 0.744066749
cg00000714 0.203401281
cg00000721 0.841238477
cg00000734 0.074881848
cg00000765 0.850685
cg00000769 0.059295362
cg00000905 0.0626819
cg00000924 0.451155294
cg00000948 0.788770455
cg00000974 0.043995525

Total number of rows: 518474

Table truncated, full table size 11589 Kbytes.




Supplementary file Size Download File type/resource
GSM6603335_204081560098_R05C01_Grn.idat.gz 6.9 Mb (ftp)(http) IDAT
GSM6603335_204081560098_R05C01_Red.idat.gz 7.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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