|
Status |
Public on Oct 01, 2023 |
Title |
si_H_NS_1 |
Sample type |
SRA |
|
|
Source name |
MCEC
|
Organism |
Mus musculus |
Characteristics |
cell line: MCEC cell type: Endothelial Cells knockdown: sihnRNP H1 treatment: 0 ng/ml TGF-Beta
|
Treatment protocol |
NS vs. TGF-β
|
Extracted molecule |
polyA RNA |
Extraction protocol |
RNA was extracted using a commertial RNA extraction kit Novogene
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
Allignment, Hisat2 Mapping, feature counts Diff analysis, Deseq2 Splicing, rMATs Assembly: ensembl_mus_musculus_grcm38_p6_gca_000001635_8 Supplementary files format and content: Excel files from differentially expressed genes
|
|
|
Submission date |
Oct 20, 2022 |
Last update date |
Oct 01, 2023 |
Contact name |
Joerg Heineke |
E-mail(s) |
joerg.heineke@medma.uni-heidelberg.de
|
Organization name |
Medical Faculty of Mannheim Heidelberg University
|
Department |
Cardiovascular Physiology
|
Street address |
Ludolf-Krehlstr. 7-11 Tridomus B
|
City |
Mannheim |
ZIP/Postal code |
68167 |
Country |
Germany |
|
|
Platform ID |
GPL24247 |
Series (2) |
GSE216227 |
TGF-β regulated RNA-binding proteins control endothelial function and mesenchymal transition in cardiac endothelial cells [RNA-seq] |
GSE216228 |
TGF-β regulated RNA-binding proteins control endothelial function and mesenchymal transition in cardiac endothelial cells |
|
Relations |
BioSample |
SAMN31250934 |
SRA |
SRX17971652 |