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Sample GSM6663227 Query DataSets for GSM6663227
Status Public on Oct 01, 2023
Title si_H_NS_1
Sample type SRA
 
Source name MCEC
Organism Mus musculus
Characteristics cell line: MCEC
cell type: Endothelial Cells
knockdown: sihnRNP H1
treatment: 0 ng/ml TGF-Beta
Treatment protocol NS vs. TGF-β
Extracted molecule polyA RNA
Extraction protocol RNA was extracted using a commertial RNA extraction kit
Novogene
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing Allignment, Hisat2
Mapping, feature counts
Diff analysis, Deseq2
Splicing, rMATs
Assembly: ensembl_mus_musculus_grcm38_p6_gca_000001635_8
Supplementary files format and content: Excel files from differentially expressed genes
 
Submission date Oct 20, 2022
Last update date Oct 01, 2023
Contact name Joerg Heineke
E-mail(s) joerg.heineke@medma.uni-heidelberg.de
Organization name Medical Faculty of Mannheim Heidelberg University
Department Cardiovascular Physiology
Street address Ludolf-Krehlstr. 7-11 Tridomus B
City Mannheim
ZIP/Postal code 68167
Country Germany
 
Platform ID GPL24247
Series (2)
GSE216227 TGF-β regulated RNA-binding proteins control endothelial function and mesenchymal transition in cardiac endothelial cells [RNA-seq]
GSE216228 TGF-β regulated RNA-binding proteins control endothelial function and mesenchymal transition in cardiac endothelial cells
Relations
BioSample SAMN31250934
SRA SRX17971652

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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