NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM66765 Query DataSets for GSM66765
Status Public on Jul 29, 2005
Title C. jejuni (agar vs broth) - dataset3
Sample type RNA
 
Channel 1
Source name C. jejuni 11168 grown on agar
Organism Campylobacter jejuni
Characteristics C. jejuni 11168 grown on agar
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name C. jejuni grown in broth
Organism Campylobacter jejuni
Characteristics C. jejuni grown in broth
Extracted molecule total RNA
Label C. jejuni grown in broth
 
 
Description Growth in broth was achieved by transferring stock culture to MH broth in tissue culture flasks and incubated microaerobically. Growth on agar was achieved by transferring stock culture onto MH agar plates, spreading the culture to produce a lawn, and incubation microaerobically. Cell densities in both growth conditions increased steadily up to 12 hrs and maximum cell densities were achieved at 18 hrs following which cell death starts to occur. Thus based on the growth curve C. jejuni cells at 16 hrs of incubation were used in all studies.
Data processing ArrayPro Analyser
 
Submission date Jul 28, 2005
Last update date Sep 24, 2007
Contact name John H Nash
E-mail(s) John.Nash@gmail.com
Organization name National Research Council
Department Institute for Biological Sciences
Street address 100 Sussex Drive
City Ottawa
State/province Ontario
ZIP/Postal code K1A0R6
Country Canada
 
Platform ID GPL2681
Series (1)
GSE3028 Genomic and Proteomic Characterization of Sessile and Planktonic Campylobacter jejuni NCTC 11168

Data table header descriptions
ID_REF
VALUE log2 (Net Int (Agar)/Net Int (Broth))
Int (mean) {Agar} <bottom 1>
Int (mean) {Broth} <bottom 1>
Int (med) {Agar} <bottom 1>
Int (med) {Broth} <bottom 1>
BG (mean) {Agar} <bottom 1>
BG (mean) {Broth} <bottom 1>
BG (med) {Agar} <bottom 1>
BG (med) {Broth} <bottom 1>
Flag All Ignored Cells

Data table
ID_REF VALUE Int (mean) {Agar} <bottom 1> Int (mean) {Broth} <bottom 1> Int (med) {Agar} <bottom 1> Int (med) {Broth} <bottom 1> BG (mean) {Agar} <bottom 1> BG (mean) {Broth} <bottom 1> BG (med) {Agar} <bottom 1> BG (med) {Broth} <bottom 1> Flag
1 -0.457795659 815.38 1117.13 42 344 3.77 0.92 2 0 0
2 -0.104152262 926.36 993.56 26 144 2.36 0.21 2 0 0
3 -0.65551992 3328.66 5240.1 2046 4924 1.86 0.25 2 0 0
4 -0.622427967 3418.8 5260.04 2654 5438 2.49 0.17 2 0 0
5 -0.082643188 1839.29 1945.61 652 1261 2.06 0.03 2 0 0
6 -0.019817505 1695.27 1716.69 654 1239 2.63 0.01 2 0 0
7 -0.251026124 2169.34 2579.25 1638 2572 1.91 0.11 2 0 0
8 -0.199626951 1982.44 2274.34 918 1888 1.67 0.1 2 0 0
9 -1.171147215 6959.45 15667.53 6190 17703 2.57 0.34 2 0 0
10 -1.369597299 6912.34 17856.21 6056 19293 2.39 0.24 2 0 0
11 -0.483960494 21399.01 29928.18 19672 30682 1.21 0.13 0 0 0
12 -0.553236003 21450.12 31472.4 21025 33320 1.72 0.05 2 0 0
13 -0.597950363 2875.42 4346.08 1946 3929 6.38 1.17 4 0 0
14 -0.999194437 1963.6 3921.01 1102 4154 2.7 0.1 2 0 0
15 -2.346653476 3429.97 17436.13 2500 12171 2.34 0.07 2 0 0
16 -2.338210769 3308.72 16721.26 1708 10083 2.97 0.36 2 0 0
17 -0.509153477 6248 8889.4 5260 9747 2.92 0.13 2 0 0
18 -0.484615866 9125.72 12766.03 7996 14351 2.71 0.13 2 0 0
19 0.024556109 3610.47 3547.57 2174 3443 3.17 0.17 2 0 0
20 -0.086498427 3392.09 3597.44 2358 3212 2.81 0.06 4 0 0

Total number of rows: 4608

Table truncated, full table size 257 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap