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Sample GSM66768 Query DataSets for GSM66768
Status Public on Jul 29, 2005
Title C. jejuni (agar vs broth) - dataset 4
Sample type RNA
 
Channel 1
Source name C. jejuni 11168 grown on agar
Organism Campylobacter jejuni
Characteristics C. jejuni 11168 grown on agar
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name C. jejuni grown in broth
Organism Campylobacter jejuni
Characteristics C. jejuni grown in broth
Extracted molecule total RNA
Label Cy5
 
 
Description Growth in broth was achieved by transferring stock culture to MH broth in tissue culture flasks and incubated microaerobically. Growth on agar was achieved by transferring stock culture onto MH agar plates, spreading the culture to produce a lawn, and incubation microaerobically. Cell densities in both growth conditions increased steadily up to 12 hrs and maximum cell densities were achieved at 18 hrs following which cell death starts to occur. Thus based on the growth curve C. jejuni cells at 16 hrs of incubation were used in all studies.
Data processing ArrayPro Analyser
 
Submission date Jul 28, 2005
Last update date Sep 24, 2007
Contact name John H Nash
E-mail(s) John.Nash@gmail.com
Organization name National Research Council
Department Institute for Biological Sciences
Street address 100 Sussex Drive
City Ottawa
State/province Ontario
ZIP/Postal code K1A0R6
Country Canada
 
Platform ID GPL2681
Series (1)
GSE3028 Genomic and Proteomic Characterization of Sessile and Planktonic Campylobacter jejuni NCTC 11168

Data table header descriptions
ID_REF
VALUE log2 (Net Int (Agar)/Net Int (Broth))
Int (mean) {Agar}
Int (mean) {Suspension}
Int (med) {Agar}
Int (med) {Suspension}
BG (mean) {Agar}
BG (mean) {Suspension}
BG (med) {Agar}
BG (med) {Suspension}
Flag All Ignored Cells

Data table
ID_REF VALUE Int (mean) {Agar} Int (mean) {Suspension} Int (med) {Agar} Int (med) {Suspension} BG (mean) {Agar} BG (mean) {Suspension} BG (med) {Agar} BG (med) {Suspension} Flag
1 4018.41 3873.56 3003 2321 708.25 992.63 599 307 1
2 5285.75 5006.82 3341 3507 752.76 1012.81 603 333 1
3 19878.39 16369.9 20453 14843 816.11 1069.36 686 327 1
4 15721.75 13609.92 12576 10776 868.77 1128.94 722 441 1
5 21156.13 18612.08 17533 14964 1029.25 1434.56 775 684 1
6 28996.11 25910.64 34282 26219 862.55 1422.06 750 832 1
7 23354.19 19527.05 20210 15843 918.04 1453.24 770 880 1
8 23349.83 19189.84 21654 15883 954.1 1465.06 724 921 1
9 15904.24 13973.23 16403 14385 870.78 1433.35 698 857 1
10 13418.35 12226.84 13408 10411 835.66 1362.07 685 735 1
11 7505.63 5863.62 7332 5338 752.44 1241.5 641 586 1
12 7153.11 6177 6899 5543 728.62 1323.72 625 680 1
13 5402.44 4202.42 5193 3787 749.1 1025.29 604 365 1
14 5837.52 4571.27 5897 3991 784.24 1018.48 648 358 1
15 2727.06 1969.22 2833 1543 798.72 1005.26 685 358 1
16 2216.28 2006.81 1324 1140 952.15 1244.13 791 604 1
17 2730.04 2828.61 2491 2517 1146.32 1562.64 777 721 1
18 2502.48 2515.21 2208 1838 1052.27 1572.32 796 947 1
19 1430.06 1829.44 1138 1467 977.97 1517.12 812 934 1
20 1400.25 1995.24 1088 1575 974.51 1509.29 750 942 1

Total number of rows: 4608

Table truncated, full table size 279 Kbytes.




Supplementary data files not provided

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