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Sample GSM667894 Query DataSets for GSM667894
Status Public on May 01, 2011
Title Bahati_NA15510_2.1
Sample type genomic
 
Channel 1
Source name Bahati
Organism Gorilla gorilla
Characteristics name: Bahati
Extracted molecule genomic DNA
Extraction protocol As described in Nimblegen protocol
Label Cy3
Label protocol As described in Nimblegen protocol
 
Channel 2
Source name NA15510
Organism Homo sapiens
Characteristics name: NA15510
Biomaterial provider Coriell cell line NA15510 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA15510
Extracted molecule genomic DNA
Extraction protocol As described in Nimblegen protocol
Label Cy5
Label protocol As described in Nimblegen protocol
 
 
Hybridization protocol As described in Nimblegen protocol
Scan protocol As described in Nimblegen protocol
Data processing Normalized according to Nimblegen protocol
 
Submission date Feb 04, 2011
Last update date Jul 25, 2011
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL9684
Series (1)
GSE27072 Structural variation of the gorilla genome

Data table header descriptions
ID_REF
EXP_119434CB30073A01_532
REF_119434CB30073A01_635
RATIO
EXP_NORM
REF_NORM
VALUE Normalized log2 (Cy3/Cy5) ratio

Data table
ID_REF EXP_119434CB30073A01_532 REF_119434CB30073A01_635 RATIO EXP_NORM REF_NORM VALUE
CHR01P000007744 11.157 11.136 0.021 10.847 11.448 -0.600
CHR01P000010094 12.683 13.834 -1.151 12.600 13.647 -1.046
CHR01P000011094 12.741 14.639 -1.898 12.667 14.368 -1.701
CHR01P000012344 13.299 14.969 -1.670 13.316 14.671 -1.355
CHR01P000013394 12.574 15.342 -2.769 12.474 15.025 -2.550
CHR01P000014344 12.349 13.009 -0.659 12.218 12.955 -0.736
CHR01P000015444 13.284 14.415 -1.131 13.298 14.167 -0.869
CHR01P000016544 12.367 13.398 -1.031 12.239 13.282 -1.043
CHR01P000017794 10.829 11.429 -0.600 10.455 11.675 -1.220
CHR01P000019944 13.156 14.475 -1.319 13.149 14.221 -1.072
CHR01P000021044 12.461 13.558 -1.097 12.345 13.414 -1.069
CHR01P000022244 11.006 12.683 -1.678 10.668 12.687 -2.019
CHR01P000023244 12.526 13.047 -0.522 12.420 12.986 -0.565
CHR01P000030944 10.343 11.811 -1.468 9.794 11.979 -2.184
CHR01P000031944 10.204 13.325 -3.121 9.570 13.220 -3.650
CHR01P000033094 10.951 12.591 -1.640 10.602 12.612 -2.009
CHR01P000034344 11.722 11.816 -0.094 11.501 11.982 -0.481
CHR01P000036544 11.611 11.116 0.494 11.373 11.432 -0.059
CHR01P000037544 12.529 12.701 -0.172 12.424 12.702 -0.278
CHR01P000039844 11.482 12.825 -1.344 11.226 12.805 -1.579

Total number of rows: 2175072

Table truncated, full table size 118493 Kbytes.




Supplementary file Size Download File type/resource
GSM667894_119434CB30073A01_532.pair.gz 11.7 Mb (ftp)(http) PAIR
GSM667894_119434CB30073A01_635.pair.gz 11.6 Mb (ftp)(http) PAIR
GSM667894_119434CB30073A02_532.pair.gz 11.6 Mb (ftp)(http) PAIR
GSM667894_119434CB30073A02_635.pair.gz 11.6 Mb (ftp)(http) PAIR
GSM667894_119434CB30073A03_532.pair.gz 11.5 Mb (ftp)(http) PAIR
GSM667894_119434CB30073A03_635.pair.gz 11.5 Mb (ftp)(http) PAIR
Processed data included within Sample table

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