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Sample GSM668114 Query DataSets for GSM668114
Status Public on May 01, 2011
Title NA15510_Bahati_2.1
Sample type genomic
 
Channel 1
Source name NA15510
Organism Homo sapiens
Characteristics name: NA15510
Biomaterial provider Coriell cell line NA15510 http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA15510
Extracted molecule genomic DNA
Extraction protocol As described in Nimblegen protocol
Label Cy3
Label protocol As described in Nimblegen protocol
 
Channel 2
Source name Bahati
Organism Gorilla gorilla
Characteristics name: Bahati
Extracted molecule genomic DNA
Extraction protocol As described in Nimblegen protocol
Label Cy5
Label protocol As described in Nimblegen protocol
 
 
Hybridization protocol As described in Nimblegen protocol
Scan protocol As described in Nimblegen protocol
Data processing Normalization (qspline) was performed using NimbleScan 2.4. Normalized log2 Cy3/Cy5.
 
Submission date Feb 04, 2011
Last update date Jul 25, 2011
Contact name Tomas Marques-Bonet
URL http://eichlerlab.gs.washington.edu/
Organization name University of Washington
Department Genome Sciences
Lab Evan Eichler
Street address 1705 NE Pacific St,
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL9684
Series (1)
GSE27072 Structural variation of the gorilla genome

Data table header descriptions
ID_REF
EXP_119495CB30074A01_532
REF_119495CB30074A01_635
RATIO
EXP_NORM
REF_NORM
VALUE log2 ratio

Data table
ID_REF EXP_119495CB30074A01_532 REF_119495CB30074A01_635 RATIO EXP_NORM REF_NORM VALUE
CHR01P000007744 11.685 9.722 1.963 11.464 10.545 0.919
CHR01P000010094 13.908 12.439 1.469 13.826 12.491 1.335
CHR01P000011094 14.744 12.783 1.961 14.641 12.796 1.845
CHR01P000012344 14.389 12.728 1.661 14.298 12.747 1.550
CHR01P000013394 15.288 12.363 2.925 15.170 12.426 2.744
CHR01P000014344 13.427 11.767 1.661 13.349 11.930 1.419
CHR01P000015444 14.527 13.292 1.235 14.432 13.262 1.170
CHR01P000016544 13.714 12.052 1.662 13.634 12.162 1.472
CHR01P000017794 11.758 10.231 1.527 11.550 10.846 0.705
CHR01P000019944 14.110 12.999 1.111 14.025 12.991 1.034
CHR01P000021044 13.591 11.991 1.600 13.513 12.113 1.400
CHR01P000022244 12.150 9.705 2.446 12.001 10.535 1.466
CHR01P000023244 13.834 12.422 1.413 13.754 12.477 1.277
CHR01P000030944 12.251 8.912 3.339 12.115 10.092 2.023
CHR01P000031944 13.451 8.184 5.267 13.373 9.690 3.683
CHR01P000033094 13.000 9.538 3.462 12.916 10.441 2.474
CHR01P000034344 12.745 11.496 1.249 12.647 11.717 0.930
CHR01P000036544 12.153 11.696 0.457 12.004 11.872 0.132
CHR01P000037544 12.997 12.813 0.184 12.912 12.822 0.090
CHR01P000039844 13.487 10.807 2.680 13.408 11.218 2.190

Total number of rows: 2175072

Table truncated, full table size 119445 Kbytes.




Supplementary file Size Download File type/resource
GSM668114_119495CB30074A01_532.pair.gz 11.7 Mb (ftp)(http) PAIR
GSM668114_119495CB30074A01_635.pair.gz 11.6 Mb (ftp)(http) PAIR
GSM668114_119495CB30074A02_532.pair.gz 11.6 Mb (ftp)(http) PAIR
GSM668114_119495CB30074A02_635.pair.gz 11.6 Mb (ftp)(http) PAIR
GSM668114_119495CB30074A03_532.pair.gz 11.7 Mb (ftp)(http) PAIR
GSM668114_119495CB30074A03_635.pair.gz 11.6 Mb (ftp)(http) PAIR
Processed data included within Sample table

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