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| Status |
Public on Nov 03, 2022 |
| Title |
K348_T_39 |
| Sample type |
SRA |
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| Source name |
Tumor
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| Organism |
Homo sapiens |
| Characteristics |
tissue: Tumor
cell type: CD8 T cell
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| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen micro RNA/DNA all-prep column
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
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| Data processing |
Aligned with HISAT2
Reads counted with subread/featurecounts
normalization and differential expression with DESEQ2
Assembly: HG38
Supplementary files format and content: CSV file with raw counts for all genes and samples
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| Submission date |
Oct 27, 2022 |
| Last update date |
Nov 03, 2022 |
| Contact name |
Haydn Kissick |
| E-mail(s) |
haydn.kissick@emory.edu
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| Phone |
6172598364
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| Organization name |
Emory University
|
| Street address |
1462 Clifton Rd
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| City |
Atlanta |
| State/province |
Georgia |
| ZIP/Postal code |
30322 |
| Country |
USA |
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| Platform ID |
GPL21290 |
| Series (1) |
| GSE216731 |
LN-stem, tumor stem, tumor terminally differentiated CD8 T cells from human kidney cancer |
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| Relations |
| BioSample |
SAMN31492797 |
| SRA |
SRX18050491 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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