|
| Status |
Public on Nov 03, 2022 |
| Title |
Aldh1l1;Ptbp1-WT;Sun1-GFP, FACS-purified, Substantia Nigra [TKG6] |
| Sample type |
SRA |
| |
|
| Source name |
scRNA-Seq - TKG6_CR7
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6 ; CD1
tissue: Substantia Nigra
age: 2 months old
Sex: pooled male and female
|
| Extracted molecule |
total RNA |
| Extraction protocol |
scRNA-Seq following 10x V3.1 guideline
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic single cell |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
scRNA-Seq
|
| Data processing |
scRNA-Seq: Sequencing results were processed through the Cell Ranger pipeline (10x Genomics) with default parameters. Seurat V3 was used to perform downstream analysis following the standard pipeline.
Assembly: mm10
Supplementary files format and content: scRNA-Seq count matrix
|
| |
|
| Submission date |
Nov 02, 2022 |
| Last update date |
Nov 29, 2022 |
| Contact name |
Dong Won Thomas Kim |
| E-mail(s) |
kimtho87@gmail.com
|
| Organization name |
Johns Hopkins University
|
| Department |
Neuroscience
|
| Lab |
Blackshaw lab
|
| Street address |
733 N.Broadway, MRB building (Rm 332)
|
| City |
Baltimore |
| State/province |
Maryland |
| ZIP/Postal code |
21205 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE184933 |
Ptbp1 deletion does not induce glia-to-neuron conversion in adult mouse retina and brain. |
|
| Relations |
| BioSample |
SAMN31572528 |
| SRA |
SRX18120899 |
