|
| Status |
Public on Dec 25, 2022 |
| Title |
Section2_bio1 |
| Sample type |
SRA |
| |
|
| Source name |
SDX
|
| Organism |
Populus trichocarpa |
| Characteristics |
tissue: SDX
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA from SDX tissue was extracted using RNeasy Plant Mini Kit (QIAGEN, USA)
RNA sequencing libraries were constructed using NEBNext® Ultra™ II Directional RNA Library Prep Kit (New England Biolabs, USA)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
Internode_section_DEA.csv
|
| Data processing |
Details of data processing steps are provided in the manuscript.
Assembly: Phytozome Populus trichocarpa genome v4.1
Supplementary files format and content: For SDX from different internodes in Populus trichocarpa, the results of differential expression analysis of each gene are in CSV format.
|
| |
|
| Submission date |
Nov 07, 2022 |
| Last update date |
Dec 25, 2022 |
| Contact name |
Ying-Chung Jimmy Lin |
| E-mail(s) |
ycjimmylin@ntu.edu.tw
|
| Phone |
+886-2-33662509
|
| Organization name |
National Taiwan University
|
| Department |
Department of Life Science
|
| Street address |
No. 1, Sec. 4, Roosevelt Rd.
|
| City |
Taipei |
| ZIP/Postal code |
106319 |
| Country |
Taiwan |
| |
|
| Platform ID |
GPL32342 |
| Series (1) |
| GSE180121 |
Single-cell transcriptomics unveils xylem cell development and evolution |
|
| Relations |
| BioSample |
SAMN31642973 |
| SRA |
SRX18193257 |
