|
Status |
Public on Dec 25, 2022 |
Title |
Section4_bio2 |
Sample type |
SRA |
|
|
Source name |
SDX
|
Organism |
Populus trichocarpa |
Characteristics |
tissue: SDX
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA from SDX tissue was extracted using RNeasy Plant Mini Kit (QIAGEN, USA) RNA sequencing libraries were constructed using NEBNext® Ultra™ II Directional RNA Library Prep Kit (New England Biolabs, USA)
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Description |
Internode_section_DEA.csv
|
Data processing |
Details of data processing steps are provided in the manuscript. Assembly: Phytozome Populus trichocarpa genome v4.1 Supplementary files format and content: For SDX from different internodes in Populus trichocarpa, the results of differential expression analysis of each gene are in CSV format.
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|
|
Submission date |
Nov 07, 2022 |
Last update date |
Dec 25, 2022 |
Contact name |
Ying-Chung Jimmy Lin |
E-mail(s) |
ycjimmylin@ntu.edu.tw
|
Phone |
+886-2-33662509
|
Organization name |
National Taiwan University
|
Department |
Department of Life Science
|
Street address |
No. 1, Sec. 4, Roosevelt Rd.
|
City |
Taipei |
ZIP/Postal code |
106319 |
Country |
Taiwan |
|
|
Platform ID |
GPL32342 |
Series (1) |
GSE180121 |
Single-cell transcriptomics unveils xylem cell development and evolution |
|
Relations |
BioSample |
SAMN31642923 |
SRA |
SRX18193270 |