|
Status |
Public on Dec 12, 2022 |
Title |
Monkey_Quadriceps_Male_1001 |
Sample type |
SRA |
|
|
Source name |
Quadriceps Muscle
|
Organism |
Macaca fascicularis |
Characteristics |
tissue: Quadriceps Muscle Sex: Male treatment: untreated
|
Treatment protocol |
NA NA
|
Growth protocol |
NA
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was harvested using Rneasy mini kit (Qiagen). 200-300ng of total RNA was used for the construction of sequencing libraries. RNA libraries for RNA-seq were prepared using TruSeq Stranded Total RNA Library Prep Kit Gold following manufacturer's protocols.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
|
|
Description |
Monkey_Quadriceps_Male_1001 Cyno_FPKM_table_Mar22.xlsx
|
Data processing |
ArrayStudio Sequence reads were trimmed for adaptor sequence/low-quality sequence using ArrayStudio Trimmed sequence reads were mapped to Mouse.B38, Rat.B6.0, Dog.CanFam3.1, and Macaca_fascicularis_5.0 Read count extraction and normalization were performed using ArrayStudio Assembly: Mouse.B38, Rat.B6.0, Dog.CanFam3.1, and Macaca_fascicularis_5.0 Supplementary files format and content: tab-delimited text files include RPKM values for each Sample
|
|
|
Submission date |
Nov 29, 2022 |
Last update date |
Dec 12, 2022 |
Contact name |
Terry Van Vleet |
Organization name |
AbbVie
|
Street address |
1 N Waukegan Rd
|
City |
North Chicago |
State/province |
IL |
ZIP/Postal code |
60064 |
Country |
USA |
|
|
Platform ID |
GPL18648 |
Series (1) |
GSE219045 |
Preclinical Species Gene Expression Database: Development and Meta-Analysis |
|
Relations |
BioSample |
SAMN31934850 |
SRA |
SRX18425863 |