|
Status |
Public on Dec 09, 2022 |
Title |
Blood_60days_after_intervention_Patient3 |
Sample type |
genomic |
|
|
Source name |
Whole Blood
|
Organism |
Homo sapiens |
Characteristics |
patient: Patient3 time point: Timepoint3
|
Extracted molecule |
genomic DNA |
Extraction protocol |
The DNA from the blood samples at first timepoint was extracted using Invisorb® Spin Blood Mini Kit (Stratec Biomedical AG, Germany) following the manufacturer’s instructions and salting out method from the second and third timepoint.
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
Bisulfite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
DNA extracted from whole blood from patient with NAFLD
|
Data processing |
Data were processed in R, normalized using BMIQ normalization.
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|
|
Submission date |
Dec 02, 2022 |
Last update date |
Dec 10, 2022 |
Contact name |
Tomasz K Wojdacz |
E-mail(s) |
tomasz.wojdacz@pum.edu.pl
|
Organization name |
Pomeranian Medical University
|
Department |
Independent Clinical Epigenetics Laboratory
|
Street address |
Unii Lubelskiej 1
|
City |
Szczecin |
State/province |
Zachodniopomorskie |
ZIP/Postal code |
71-252 |
Country |
Poland |
|
|
Platform ID |
GPL23976 |
Series (1) |
GSE219217 |
Mediterranean diet and fiber supplementation change the whole blood DNA methylation pattern of NAFLD patients |
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