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GEO accession:
Sample GSM6782710
Query DataSets for GSM6782710
Status
Public on Dec 04, 2022
Title
microRNA-seq from middle frontal area 46 (ENCLB152ZMP)
Sample type
SRA
Source name
Homo sapiens male adult (87 years) middle frontal area 46 tissue
Organism
Homo sapiens
Characteristics
tissue_type: middle frontal area 46
biomaterial_type: tissue
description: human_brain_Rush ID_E3291783_BS154_ENC4_cDNA704
biosample encode accession: ENCBS506TDA (SAMN31998218)
organism: Homo sapiens
Sex: male
dev stage: adult
age: 87 year
donor_id: ENCDO123QRW
lab: Barbara Wold, Caltech
source: Rush University
link: ENCBS506TDA at ENCODE;
https://www.encodeproject.org/ENCBS506TDA/
link: Derived from ENCODE donor ENCDO123QRW;
https://www.encodeproject.org/ENCDO123QRW/
Extracted molecule
total RNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/49f43842-5ab4-4aa1-a6f4-2b1234955d93/@@download/attachment/Multiplexed%20miRNA%20Sequencing%20Library%20Generation%20Protocol-3.4.pdf
Library strategy
miRNA-Seq
Library source
transcriptomic
Library selection
size fractionation
Instrument model
NextSeq 2000
Description
https://www.encodeproject.org/experiments/ENCSR142LHL/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation human Rush brain microRNA-seq from Mortazavi
experiment encode accession: ENCSR142LHL
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2022-08-01
lab: Ali Mortazavi, UCI
library encode accession: ENCLB152ZMP
size range: <30
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 02, 2022
Last update date
Jan 20, 2023
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL30173
Series (1)
GSE219500
microRNA-seq from middle frontal area 46 (ENCSR142LHL)
Relations
BioSample
SAMN31998218
SRA
SRX18485570
Named Annotation
GSM6782710_ENCFF366ZLU_plus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation
GSM6782710_ENCFF445OKU_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation
GSM6782710_ENCFF144ZET_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation
GSM6782710_ENCFF669TRW_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Supplementary file
Size
Download
File type/resource
GSM6782710_ENCFF144ZET_minus_strand_signal_of_all_reads_GRCh38.bigWig
22.2 Mb
(ftp)
(http)
BIGWIG
GSM6782710_ENCFF366ZLU_plus_strand_signal_of_all_reads_GRCh38.bigWig
22.7 Mb
(ftp)
(http)
BIGWIG
GSM6782710_ENCFF382SQY_microRNA_quantifications_GRCh38.tsv.gz
9.2 Kb
(ftp)
(http)
TSV
GSM6782710_ENCFF445OKU_plus_strand_signal_of_unique_reads_GRCh38.bigWig
8.3 Mb
(ftp)
(http)
BIGWIG
GSM6782710_ENCFF669TRW_minus_strand_signal_of_unique_reads_GRCh38.bigWig
8.2 Mb
(ftp)
(http)
BIGWIG
GSM6782710_ENCLB152ZMP_README.txt.gz
668 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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