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GEO accession:
Sample GSM6782782
Query DataSets for GSM6782782
Status
Public on Dec 04, 2022
Title
microRNA-seq from MCF 10A (ENCLB286VNX)
Sample type
SRA
Source name
Homo sapiens MCF 10A cell line
Organism
Homo sapiens
Characteristics
line: MCF 10A
biomaterial_type: cell line
biosample encode accession: ENCBS534SPQ (SAMN31998249)
organism: Homo sapiens
Sex: female
health state: fibrocystic disease
dev stage: adult
age: 36 year
donor_id: ENCDO000AAP
lab: Mats Ljungman, UMichigan
source: ATCC
link: ENCBS534SPQ at ENCODE;
https://www.encodeproject.org/ENCBS534SPQ/
link: Derived from ENCODE donor ENCDO000AAP;
https://www.encodeproject.org/ENCDO000AAP/
Extracted molecule
total RNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/49f43842-5ab4-4aa1-a6f4-2b1234955d93/@@download/attachment/Multiplexed%20miRNA%20Sequencing%20Library%20Generation%20Protocol-3.4.pdf
Library strategy
miRNA-Seq
Library source
transcriptomic
Library selection
size fractionation
Instrument model
NextSeq 2000
Description
https://www.encodeproject.org/experiments/ENCSR165HDP/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation human MCF10A cell line microRNA-seq from Mortazavi
experiment encode accession: ENCSR165HDP
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2022-02-01
lab: Ali Mortazavi, UCI
library encode accession: ENCLB286VNX
size range: <30
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 02, 2022
Last update date
Jan 20, 2023
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL30173
Series (1)
GSE219541
microRNA-seq from MCF 10A (ENCSR165HDP)
Relations
BioSample
SAMN31998249
SRA
SRX18485642
Named Annotation
GSM6782782_ENCFF758RHU_minus_strand_signal_of_all_reads_GRCh38.bigWig
Named Annotation
GSM6782782_ENCFF150LOL_minus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation
GSM6782782_ENCFF992FXH_plus_strand_signal_of_unique_reads_GRCh38.bigWig
Named Annotation
GSM6782782_ENCFF930GTG_plus_strand_signal_of_all_reads_GRCh38.bigWig
Supplementary file
Size
Download
File type/resource
GSM6782782_ENCFF150LOL_minus_strand_signal_of_unique_reads_GRCh38.bigWig
4.2 Mb
(ftp)
(http)
BIGWIG
GSM6782782_ENCFF313OAQ_microRNA_quantifications_GRCh38.tsv.gz
9.0 Kb
(ftp)
(http)
TSV
GSM6782782_ENCFF758RHU_minus_strand_signal_of_all_reads_GRCh38.bigWig
9.3 Mb
(ftp)
(http)
BIGWIG
GSM6782782_ENCFF930GTG_plus_strand_signal_of_all_reads_GRCh38.bigWig
9.7 Mb
(ftp)
(http)
BIGWIG
GSM6782782_ENCFF992FXH_plus_strand_signal_of_unique_reads_GRCh38.bigWig
4.2 Mb
(ftp)
(http)
BIGWIG
GSM6782782_ENCLB286VNX_README.txt.gz
660 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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