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GEO accession:
Sample GSM6782865
Query DataSets for GSM6782865
Status
Public on Dec 04, 2022
Title
long read RNA-seq from layer of hippocampus (ENCLB278HSI)
Sample type
SRA
Source name
Mus musculus strain B6NCrl adult (6 months) layer of hippocampus tissue
Organism
Mus musculus
Characteristics
tissue_type: layer of hippocampus
biomaterial_type: tissue
description: Hippocampus from 6 mo C57BL/6 male
biosample encode accession: ENCBS486VZJ (SAMN31998196)
organism: Mus musculus
Sex: not collected
dev stage: adult
age: 6 month
donor_id: ENCDO956IXV
lab: Ali Mortazavi, UCI
source: Andrea Tenner
link: ENCBS486VZJ at ENCODE;
https://www.encodeproject.org/ENCBS486VZJ/
link: Derived from ENCODE donor ENCDO956IXV;
https://www.encodeproject.org/ENCDO956IXV/
Extracted molecule
total RNA
Extraction protocol
pipeline protocol:
https://www.encodeproject.org/documents/5a9cb0de-a425-449d-bc65-6316f79e71ce/@@download/attachment/ENCODE%20Long%20Read%20RNA-Seq%20Analysis%20Pipeline%20%28Mouse%29.pdf
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
cDNA
Instrument model
Sequel
Description
https://www.encodeproject.org/experiments/ENCSR214HSG/
***************
biological replicate number: 1
technical replicate number: 1
description: Hippocampus1 from 6 mo C57BL/6 male
experiment encode accession: ENCSR214HSG
assay title: long read RNA-seq
assembly: mm10
encode release date: 2019-06-28
lab: Ali Mortazavi, UCI
library encode accession: ENCLB278HSI
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 03, 2022
Last update date
Jan 19, 2023
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL24198
Series (1)
GSE219589
long read RNA-seq from layer of hippocampus (ENCSR214HSG)
Relations
BioSample
SAMN31998196
SRA
SRX18485725
Supplementary file
Size
Download
File type/resource
GSM6782865_ENCFF901VHB_transcriptome_annotations_mm10.gtf.gz
39.3 Mb
(ftp)
(http)
GTF
GSM6782865_ENCFF935JTV_transcript_quantifications_mm10.tsv.gz
2.3 Mb
(ftp)
(http)
TSV
GSM6782865_ENCLB278HSI_README.txt.gz
546 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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