GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM6783186
Query DataSets for GSM6783186
Status
Public on Dec 04, 2022
Title
long read RNA-seq from forelimb (ENCLB393ATC)
Sample type
SRA
Source name
Mus musculus strain B6NCrl embryo (11 days) forelimb tissue
Organism
Mus musculus
Characteristics
tissue_type: forelimb
biomaterial_type: tissue
description: Mus musculus strain B6NCrl embryo (11 days) forelimb tissue
biosample encode accession: ENCBS084VOL (SAMN31997762)
organism: Mus musculus
Sex: not collected
dev stage: embryonic
age: 11 day
donor_id: ENCDO956IXV
lab: Ali Mortazavi, UCI
source: The Jackson Laboratory
link: ENCBS084VOL at ENCODE;
https://www.encodeproject.org/ENCBS084VOL/
link: Derived from ENCODE donor ENCDO956IXV;
https://www.encodeproject.org/ENCDO956IXV/
Extracted molecule
total RNA
Extraction protocol
pipeline protocol:
https://www.encodeproject.org/documents/5a9cb0de-a425-449d-bc65-6316f79e71ce/@@download/attachment/ENCODE%20Long%20Read%20RNA-Seq%20Analysis%20Pipeline%20%28Mouse%29.pdf
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
cDNA
Instrument model
Sequel
Description
https://www.encodeproject.org/experiments/ENCSR804QMV/
***************
biological replicate number: 1
technical replicate number: 1
description: Mus musculus strain B6NCrl embryo (11 days) forelimb tissue
experiment encode accession: ENCSR804QMV
assay title: long read RNA-seq
assembly: mm10
encode release date: 2019-12-19
lab: Ali Mortazavi, UCI
library encode accession: ENCLB393ATC
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 03, 2022
Last update date
Jan 19, 2023
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL24198
Series (1)
GSE219770
long read RNA-seq from forelimb (ENCSR804QMV)
Relations
BioSample
SAMN31997762
SRA
SRX18486046
Supplementary file
Size
Download
File type/resource
GSM6783186_ENCFF354BPX_transcript_quantifications_mm10.tsv.gz
1.7 Mb
(ftp)
(http)
TSV
GSM6783186_ENCFF779BMP_transcriptome_annotations_mm10.gtf.gz
36.9 Mb
(ftp)
(http)
GTF
GSM6783186_ENCLB393ATC_README.txt.gz
541 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
