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GEO accession:
Sample GSM6783265
Query DataSets for GSM6783265
Status
Public on Dec 04, 2022
Title
long read RNA-seq from C2C12 (ENCLB924PNJ)
Sample type
SRA
Source name
Mus musculus C2C12 cell line
Organism
Mus musculus
Characteristics
line: C2C12
biomaterial_type: cell line
description: Myoblast cell line derived from thigh muscle of C3H mice after crush injury
biosample encode accession: ENCBS670LTF (SAMN31998406)
organism: Mus musculus
Sex: not collected
dev stage: unknown
age: unknown
donor_id: ENCDO321TZV
lab: Ali Mortazavi, UCI
source: ATCC
link: ENCBS670LTF at ENCODE;
https://www.encodeproject.org/ENCBS670LTF/
link: Derived from ENCODE donor ENCDO321TZV;
https://www.encodeproject.org/ENCDO321TZV/
Extracted molecule
total RNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/54012fc3-644e-49af-97e4-888226753fd9/@@download/attachment/Protocol_ENCODEsubmission_nosizeselected-2.pdf
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
cDNA
Instrument model
Sequel
Description
https://www.encodeproject.org/experiments/ENCSR418ZYU/
***************
biological replicate number: 2
technical replicate number: 1
description: Myoblast cell line derived from thigh muscle of C3H mice after crush injury
experiment encode accession: ENCSR418ZYU
assay title: long read RNA-seq
assembly: mm10
encode release date: 2019-12-05
lab: Ali Mortazavi, UCI
library encode accession: ENCLB924PNJ
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 03, 2022
Last update date
Jan 19, 2023
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL24198
Series (1)
GSE219813
long read RNA-seq from C2C12 (ENCSR418ZYU)
Relations
BioSample
SAMN31998406
SRA
SRX18486125
Supplementary file
Size
Download
File type/resource
GSM6783265_ENCFF449KMJ_transcriptome_annotations_mm10.gtf.gz
33.6 Mb
(ftp)
(http)
GTF
GSM6783265_ENCFF898EJY_transcript_quantifications_mm10.tsv.gz
1.4 Mb
(ftp)
(http)
TSV
GSM6783265_ENCLB924PNJ_README.txt.gz
537 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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