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GEO accession:
Sample GSM6783465
Query DataSets for GSM6783465
Status
Public on Dec 04, 2022
Title
long read RNA-seq from adrenal gland (ENCLB960VMW)
Sample type
SRA
Source name
Mus musculus strain C57BL/6J adrenal gland tissue
Organism
Mus musculus
Characteristics
tissue_type: adrenal gland
biomaterial_type: tissue
description: RNA Evaluation adrenal gland C57BL6 WT male microRNA-seq from Mortazavi
biosample encode accession: ENCBS873WBE (SAMN13691300)
Sex: not collected
dev stage: unknown
age: unknown
donor_id: ENCDO072AAA
lab: Ali Mortazavi, UCI
source: The Jackson Laboratory
strain: C57BL/6J
link: ENCBS873WBE at ENCODE;
https://www.encodeproject.org/ENCBS873WBE/
link: Derived from ENCODE donor ENCDO072AAA;
https://www.encodeproject.org/ENCDO072AAA/
Extracted molecule
total RNA
Extraction protocol
pipeline protocol:
https://www.encodeproject.org/documents/5a9cb0de-a425-449d-bc65-6316f79e71ce/@@download/attachment/ENCODE%20Long%20Read%20RNA-Seq%20Analysis%20Pipeline%20%28Mouse%29.pdf
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
cDNA
Instrument model
Sequel
Description
https://www.encodeproject.org/experiments/ENCSR942UFC/
***************
biological replicate number: 2
technical replicate number: 1
description: adrenal gland BL6 male
experiment encode accession: ENCSR942UFC
assay title: long read RNA-seq
assembly: mm10
encode release date: 2020-07-30
lab: Ali Mortazavi, UCI
library encode accession: ENCLB960VMW
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 03, 2022
Last update date
Dec 06, 2022
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL24198
Series (1)
GSE219928
long read RNA-seq from adrenal gland (ENCSR942UFC)
Relations
BioSample
SAMN13691300
SRA
SRX18486325
Supplementary file
Size
Download
File type/resource
GSM6783465_ENCFF701QAF_transcript_quantifications_mm10.tsv.gz
1.5 Mb
(ftp)
(http)
TSV
GSM6783465_ENCFF992ZGY_transcriptome_annotations_mm10.gtf.gz
36.1 Mb
(ftp)
(http)
GTF
GSM6783465_ENCLB960VMW_README.txt.gz
529 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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