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Sample GSM6783760

Query DataSets for GSM6783760

Status

Public on Dec 04, 2022

Title

DNase-seq from suppressor macrophage (ENCLB860FRP)

Sample type

SRA

Source name

Homo sapiens male adult (24 years) suppressor macrophage primary cell

Organism

Homo sapiens

Characteristics

cell_type: suppressor macrophage
biomaterial_type: primary cell
description: control_1h
biosample encode accession: ENCBS381YCP (SAMN18513286)
Sex: male
dev stage: adult
age: 24 year
donor_id: ENCDO488BDS
lab: John Stamatoyannopoulos, UW
source: Shelly Heimfeld
link: ENCBS381YCP at ENCODE; https://www.encodeproject.org/ENCBS381YCP/
link: Derived from ENCODE donor ENCDO488BDS; https://www.encodeproject.org/ENCDO488BDS/

Extracted molecule

genomic DNA

Extraction protocol

extraction protocol: https://www.encodeproject.org/documents/980de32c-f7ec-4cd7-b736-61faf723c186/@@download/attachment/newnuclei_isolation_from_human_tissue-combined.pdf

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina HiSeq 4000

Description

https://www.encodeproject.org/experiments/ENCSR367FKP/
***************
biological replicate number: 3
technical replicate number: 1
description:
experiment encode accession: ENCSR367FKP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2022-06-07
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB860FRP
instrument models: Illumina HiSeq 4000,Illumina HiSeq 2000

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Dec 03, 2022

Last update date

Jan 20, 2023

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL20301

Series (1)

GSE220032

DNase-seq from suppressor macrophage (ENCSR367FKP)

Relations

BioSample

SAMN18513286

SRA

SRX18486496

Named Annotation

GSM6783760_ENCFF759QTN_read-depth_normalized_signal_GRCh38.bigWig

Supplementary file	Size	Download	File type/resource
GSM6783760_ENCFF036TOU_peaks_GRCh38.bed.gz	3.3 Mb	(ftp)(http)	BED
GSM6783760_ENCFF109JOE_peaks_GRCh38.bed.gz	2.6 Mb	(ftp)(http)	BED
GSM6783760_ENCFF195UIM_peaks_GRCh38.bigBed	4.7 Mb	(ftp)(http)	BIGBED
GSM6783760_ENCFF238ZHS_FDR_cut_rate_GRCh38.bed.gz	601.4 Mb	(ftp)(http)	BED
GSM6783760_ENCFF500DQB_footprints_GRCh38.bed.gz	4.2 Mb	(ftp)(http)	BED
GSM6783760_ENCFF575SVU_peaks_GRCh38.bigBed	5.8 Mb	(ftp)(http)	BIGBED
GSM6783760_ENCFF734KTD_footprints_GRCh38.bigBed	5.2 Mb	(ftp)(http)	BIGBED
GSM6783760_ENCFF759QTN_read-depth_normalized_signal_GRCh38.bigWig	646.2 Mb	(ftp)(http)	BIGWIG
GSM6783760_ENCFF825PUX_peaks_GRCh38.starch	2.7 Mb	(ftp)(http)	STARCH
GSM6783760_ENCFF922VCV_FDR_cut_rate_GRCh38.bigBed	603.1 Mb	(ftp)(http)	BIGBED
GSM6783760_ENCLB860FRP_README.txt.gz	1.1 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file