|
| Status |
Public on Jun 14, 2023 |
| Title |
mRNA_103_T1 |
| Sample type |
SRA |
| |
|
| Source name |
Male - NO ICU
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: COVID-19
Sex: Male
tissue: Blood
visit: T1
outcome: NO ICU
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA
NEBNext® Ultra™ II Directional RNA Library Prep with Sample Purification Beads
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
NGS0103_T1_S211
|
| Data processing |
Fastqc
Trimming of reads using trimmomatic and fastp
Hisat2 alignment using Ensemble Grch38
Raw Gene ocunt generation using htseq-count program
Assembly: Grch38
Supplementary files format and content: htseq-Count text fiile
|
| |
|
| Submission date |
Dec 05, 2022 |
| Last update date |
Jun 14, 2023 |
| Contact name |
Youssef Idaghdour |
| E-mail(s) |
youssef.idaghdour@nyu.edu
|
| Organization name |
NYUAD
|
| Department |
Biology
|
| Lab |
Division of Science and Mathematics
|
| Street address |
Saadiyat Marina District
|
| City |
Abu dhabi |
| State/province |
Abu dhabi |
| ZIP/Postal code |
129188 |
| Country |
United Arab Emirates |
| |
|
| Platform ID |
GPL24676 |
| Series (2) |
| GSE220076 |
Associations of miRNAs with blood phenotypes and ICU admission in COVID-19 patients [mRNA-seq] |
| GSE220078 |
Associations of miRNAs with blood phenotypes and ICU admission in COVID-19 patients |
|
| Relations |
| BioSample |
SAMN32041111 |
| SRA |
SRX18491416 |
