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Sample GSM683811

Query DataSets for GSM683811

Status

Public on Mar 01, 2011

Title

Myers_BC_Skeletal_Muscle_01-11002_2_None_BioChain

Sample type

SRA

Source name

BC_Skeletal_Muscle_01-11002

Organism

Homo sapiens

Characteristics

cell: BC_Skeletal_Muscle_01-11002
cell organism: Human
cell description: Donor 01-11002; Age 83; Caucasian; DNA and RNA Extract
cell karyotype: Normal
cell lineage: Skeletal muscle
cell sex: F
replicate: 2
treatment: None
obtainedby: BioChain

Biomaterial provider

BioChain

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/HudsonAlpha:Myers_BioChain_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs

Library strategy

Bisulfite-Seq

Library source

genomic

Library selection

Reduced Representation

Instrument model

Illumina Genome Analyzer IIx

Description

Reduced Representation

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs

Submission date

Mar 01, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL10999

Series (1)

GSE27584

DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha

Relations

SRA

SRX066311

BioSample

SAMN00621792

Supplementary file	Size	Download	File type/resource
GSM683811_hg19_wgEncodeHaibMethylRrbsBcskeletalmuscle0111002BiochainSitesRep2.bedRrbs.gz	19.8 Mb	(ftp)(http)	BEDRRBS
SRA Run Selector
Processed data provided as supplementary file
Raw data are available in SRA