GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM683841

Query DataSets for GSM683841

Status

Public on Mar 01, 2011

Title

Myers_GM12878-XiMat_2_None_HudsonAlpha

Sample type

SRA

Source name

GM12878-XiMat

Organism

Homo sapiens

Characteristics

cell: GM12878-XiMat
cell organism: Human
cell description: lymphoblastoid
cell karyotype: relatively normal
cell lineage: International HapMap Project - CEPH/Utah - European Caucasion; Epstein-Barr Virus;Cloned for maternal X inactivation
cell sex: F
replicate: 2
treatment: None
obtainedby: HudsonAlpha

Biomaterial provider

Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=GM12878

Growth protocol

Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/HudsonAlpha:GM12878-XiMat_Myers_protocol.pdf

Extracted molecule

genomic DNA

Extraction protocol

For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs

Library strategy

Bisulfite-Seq

Library source

genomic

Library selection

Reduced Representation

Instrument model

Illumina Genome Analyzer IIx

Description

Reduced Representation

Data processing

For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylRrbs

Submission date

Mar 01, 2011

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL10999

Series (1)

GSE27584

DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha

Relations

SRA

SRX066338

BioSample

SAMN00621819

Supplementary file	Size	Download	File type/resource
GSM683841_hg19_wgEncodeHaibMethylRrbsGm12878ximatHaibSitesRep2.bedRrbs.gz	14.3 Mb	(ftp)(http)	BEDRRBS
SRA Run Selector
Processed data provided as supplementary file
Raw data are available in SRA