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Sample GSM685471 Query DataSets for GSM685471
Status Public on Apr 18, 2012
Title Uveal melanoma 1
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: male
eye: right
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 04, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 548.05 P 0.000972149
AFFX-BioB-M_at 546.716 P 0.00179591
AFFX-BioB-3_at 324.057 P 0.0125468
AFFX-BioC-5_at 1174.47 P 0.000389797
AFFX-BioC-3_at 1118.32 P 6.02111e-05
AFFX-BioDn-5_at 2778.42 P 4.42873e-05
AFFX-BioDn-3_at 5035.77 P 0.000296708
AFFX-CreX-5_at 13647.6 P 5.16732e-05
AFFX-CreX-3_at 18396.7 P 4.42873e-05
AFFX-DapX-5_at 62.5904 A 0.205732
AFFX-DapX-M_at 8.67528 A 0.824672
AFFX-DapX-3_at 29.0585 A 0.455413
AFFX-LysX-5_at 89.9291 P 0.0103167
AFFX-LysX-M_at 69.8645 A 0.239063
AFFX-LysX-3_at 48.4689 A 0.227636
AFFX-PheX-5_at 15.9155 A 0.617401
AFFX-PheX-M_at 8.18215 A 0.963431
AFFX-PheX-3_at 37.2313 A 0.425962
AFFX-ThrX-5_at 15.6132 A 0.617401
AFFX-ThrX-M_at 40.9177 A 0.368438

Total number of rows: 54675

Table truncated, full table size 1623 Kbytes.




Supplementary file Size Download File type/resource
GSM685471_MU1.CEL.gz 5.3 Mb (ftp)(http) CEL
GSM685471_MU1.CHP.gz 292.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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