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Sample GSM685473 Query DataSets for GSM685473
Status Public on Apr 18, 2012
Title Uveal melanoma 10
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: male
eye: right
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 04, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 649.149 P 0.000753643
AFFX-BioB-M_at 1090.39 P 0.000752926
AFFX-BioB-3_at 678.314 P 0.000195116
AFFX-BioC-5_at 2028.44 P 6.02111e-05
AFFX-BioC-3_at 2431.64 P 4.42873e-05
AFFX-BioDn-5_at 4932.92 P 4.42873e-05
AFFX-BioDn-3_at 10471 P 7.00668e-05
AFFX-CreX-5_at 24243.2 P 5.16732e-05
AFFX-CreX-3_at 30060.1 P 4.42873e-05
AFFX-DapX-5_at 29.8919 A 0.559359
AFFX-DapX-M_at 6.65222 A 0.941556
AFFX-DapX-3_at 75.7691 A 0.440646
AFFX-LysX-5_at 5.46823 A 0.969024
AFFX-LysX-M_at 22.4221 A 0.724871
AFFX-LysX-3_at 30.5151 A 0.39692
AFFX-PheX-5_at 4.0653 A 0.991569
AFFX-PheX-M_at 21.2931 A 0.794268
AFFX-PheX-3_at 84.0017 A 0.216524
AFFX-ThrX-5_at 4.59202 A 0.996788
AFFX-ThrX-M_at 10.8797 A 0.876469

Total number of rows: 54675

Table truncated, full table size 1629 Kbytes.




Supplementary file Size Download File type/resource
GSM685473_MU10.CEL.gz 4.4 Mb (ftp)(http) CEL
GSM685473_MU10.CHP.gz 298.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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